Evidence map›Paper›PMID 36402777›Full record

ArticleNature communications2022

Structural and functional asymmetry of RING trimerization controls priming and extension events in TRIM5α autoubiquitylation.

Frank Herkules, Corey H Yu, Alexander B Taylor, Vi Dougherty, Susan T Weintraub, Dmitri N Ivanov

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Cyclophilin A Regulates Tripartite Motif 5 Alpha Restriction of HIV-1.International journal of molecular sciences · 2025
    Review
  6. Review
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Frank HerkulesDepartment of Biochemistry and Structural Biology, UT Health San Antonio, San Antonio, TX, 78229, USA.
Corey H YuDepartment of Biochemistry and Structural Biology, UT Health San Antonio, San Antonio, TX, 78229, USA.ORCID 0000-0002-1374-4194
Alexander B TaylorDepartment of Biochemistry and Structural Biology, UT Health San Antonio, San Antonio, TX, 78229, USA.ORCID 0000-0003-3517-6033
Vi DoughertyDepartment of Biochemistry and Structural Biology, UT Health San Antonio, San Antonio, TX, 78229, USA.
Susan T WeintraubDepartment of Biochemistry and Structural Biology, UT Health San Antonio, San Antonio, TX, 78229, USA.
Dmitri N IvanovDepartment of Biochemistry and Structural Biology, UT Health San Antonio, San Antonio, TX, 78229, USA. ivanov@uthscsa.edu.ORCID 0000-0002-9442-3316
The University of Texas Health Science Center at San Antonio · US

Funding

TISSUE CULTURE---COREP30CA054174 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI Robin Jean Leach · 1991 to 2026
$59.1M
Biochemistry of SAMHD1-mediated innate immunity responsesR01AI136697 · NIAID · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI IVANOV, DMITRI N · 2019 to 2022
$1.9M
Retroviral capsid recognition by TRIM5alpha restriction factorsR01AI104476 · NIAID · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI IVANOV, DMITRI N · 2014 to 2018
$1.8M
Biochemistry of SAMHD1-mediated innate immunity responsesR37AI136697 · NIAID · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI DMITRI N IVANOV · 2024 to 2026
$1.7M
Orbitrap XL/ETD Mass SpectrometerS10RR025111 · NCRR · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI WEINTRAUB, SUSAN T · 2009 to 2009
$776k
NCI NIH HHS P30 CA054174NCRR NIH HHS S10 RR025111NIAID NIH HHS R01 AI104476NIAID NIH HHS R01 AI136697NIAID NIH HHS R37 AI136697
6 · The paper itself

Abstract

TRIM5α is an E3 ubiquitin ligase of the TRIM family that binds to the capsids of primate immunodeficiency viruses and blocks viral replication after cell entry. Here we investigate how synthesis of K63-linked polyubiquitin is upregulated by transient proximity of three RING domains in honeycomb-like assemblies formed by TRIM5α on the surface of the retroviral capsid. Proximity of three RINGs creates an asymmetric arrangement, in which two RINGs form a catalytic dimer that activates E2-ubiquitin conjugates and the disordered N-terminus of the third RING acts as the substrate for N-terminal autoubiquitylation. RING dimerization is required for activation of the E2s that contribute to the antiviral function of TRIM5α, UBE2W and heterodimeric UBE2N/V2, whereas the proximity of the third RING enhances the rate of each of the two distinct steps in the autoubiquitylation process: the initial N-terminal monoubiquitylation (priming) of TRIM5α by UBE2W and the subsequent extension of the K63-linked polyubiquitin chain by UBE2N/V2. The mechanism we describe explains how recognition of infection-associated epitope patterns by TRIM proteins initiates polyubiquitin-mediated downstream events in innate immunity.

Indexed as

PolyubiquitinUbiquitin-Protein LigasesAnimalsCapsidTripartite Motif ProteinsUbiquitinPolyubiquitinTripartite Motif ProteinsUbiquitinUbiquitin-Protein Ligases

Identifiers

PMID36402777
PMCPMC9675739
OpenAlexW4309565722

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.