Evidence map›Paper›PMID 36402763›Full record

ArticleNature communications2022

PPARγ lipodystrophy mutants reveal intermolecular interactions required for enhancer activation.

Maria Stahl Madsen, Marjoleine F Broekema, Martin Rønn Madsen, Arjen Koppen, Anouska Borgman, Cathrin Gräwe, Elisabeth G K Thomsen, Denise Westland, Mariette E G Kranendonk, Marian Groot Koerkamp and 13 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 17 citations in OpenAlex.

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  7. Foods (Basel, Switzerland) · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 7 institutions in 3 countries.

Maria Stahl Madsen *Functional Genomics and Metabolism Research Unit, Department of Biochemistry and Molecular Biology, University of Southern Denmark, Odense, Denmark.ORCID 0000-0002-5039-340X
Marjoleine F Broekema *Center for Molecular Medicine, University Medical Center Utrecht, Utrecht University, Utrecht, The Netherlands.ORCID 0000-0002-1832-1262
Martin Rønn MadsenFunctional Genomics and Metabolism Research Unit, Department of Biochemistry and Molecular Biology, University of Southern Denmark, Odense, Denmark.
Arjen KoppenCenter for Molecular Medicine, University Medical Center Utrecht, Utrecht University, Utrecht, The Netherlands.ORCID 0000-0002-1753-4637
Anouska BorgmanCenter for Molecular Medicine, University Medical Center Utrecht, Utrecht University, Utrecht, The Netherlands.
Cathrin GräweDepartment of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Oncode Institute, Radboud University Nijmegen, 6525, Nijmegen, GA, The Netherlands.ORCID 0000-0002-3010-8990
Elisabeth G K ThomsenDepartment of Biology, University of Copenhagen, Copenhagen, Denmark.ORCID 0000-0001-6438-1920
Denise WestlandCenter for Molecular Medicine, University Medical Center Utrecht, Utrecht University, Utrecht, The Netherlands.
Mariette E G KranendonkCenter for Molecular Medicine, University Medical Center Utrecht, Utrecht University, Utrecht, The Netherlands.
Marian Groot KoerkampCenter for Molecular Medicine, University Medical Center Utrecht, Utrecht University, Utrecht, The Netherlands.ORCID 0000-0002-0867-0821
Nicole HamersCenter for Molecular Medicine, University Medical Center Utrecht, Utrecht University, Utrecht, The Netherlands.
Alexandre M J J BonvinFaculty of Science-Chemistry, Bijvoet Centre for Biomolecular Research, Utrecht University, Utrecht, The Netherlands.ORCID 0000-0001-7369-1322
José M Ramos PittolCenter for Molecular Medicine, University Medical Center Utrecht, Utrecht University, Utrecht, The Netherlands.ORCID 0000-0003-3753-5394
Kedar Nath NatarajanFunctional Genomics and Metabolism Research Unit, Department of Biochemistry and Molecular Biology, University of Southern Denmark, Odense, Denmark.ORCID 0000-0002-9264-1280
Sander KerstenDivision of Human Nutrition, Nutrition, Metabolism and Genomics Group, Wageningen University, Wageningen, The Netherlands.ORCID 0000-0003-4488-7734
Frank C P HolstegeCenter for Molecular Medicine, University Medical Center Utrecht, Utrecht University, Utrecht, The Netherlands.ORCID 0000-0002-8090-5146
Houshang MonajemiInternal Medicine, Rijnstate Hospital, Arnhem, The Netherlands.ORCID 0000-0002-5575-696X
Saskia W C van MilCenter for Molecular Medicine, University Medical Center Utrecht, Utrecht University, Utrecht, The Netherlands.ORCID 0000-0002-7850-5012
Michiel VermeulenDepartment of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Oncode Institute, Radboud University Nijmegen, 6525, Nijmegen, GA, The Netherlands.ORCID 0000-0003-0836-6894
Birthe B KragelundDepartment of Biology, University of Copenhagen, Copenhagen, Denmark.ORCID 0000-0002-7454-1761
David CassimanCenter for Metabolic Diseases, Leuven University Hospitals, Leuven, Belgium.ORCID 0000-0002-6154-0970
Susanne MandrupFunctional Genomics and Metabolism Research Unit, Department of Biochemistry and Molecular Biology, University of Southern Denmark, Odense, Denmark. s.mandrup@bmb.sdu.dk.ORCID 0000-0002-0961-5787
Eric KalkhovenCenter for Molecular Medicine, University Medical Center Utrecht, Utrecht University, Utrecht, The Netherlands. e.kalkhoven@umcutrecht.nl.ORCID 0000-0002-9713-7286
Utrecht University · NLUniversity of Southern Denmark · DKRadboud University Nijmegen · NLUniversity of Copenhagen · DKUniversität Innsbruck · ATUniversity of Applied Sciences Utrecht · NLWageningen University & Research · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Peroxisome proliferator-activated receptor γ (PPARγ) is the master regulator of adipocyte differentiation, and mutations that interfere with its function cause lipodystrophy. PPARγ is a highly modular protein, and structural studies indicate that PPARγ domains engage in several intra- and inter-molecular interactions. How these interactions modulate PPARγ's ability to activate target genes in a cellular context is currently poorly understood. Here we take advantage of two previously uncharacterized lipodystrophy mutations, R212Q and E379K, that are predicted to interfere with the interaction of the hinge of PPARγ with DNA and with the interaction of PPARγ ligand binding domain (LBD) with the DNA-binding domain (DBD) of the retinoid X receptor, respectively. Using biochemical and genome-wide approaches we show that these mutations impair PPARγ function on an overlapping subset of target enhancers. The hinge region-DNA interaction appears mostly important for binding and remodelling of target enhancers in inaccessible chromatin, whereas the PPARγ-LBD:RXR-DBD interface stabilizes the PPARγ:RXR:DNA ternary complex. Our data demonstrate how in-depth analyses of lipodystrophy mutants can unravel molecular mechanisms of PPARγ function.

Indexed as

LipodystrophyPPAR gammaAdipocytesHumansRegulatory Sequences, Nucleic AcidRetinoid X ReceptorsPPAR gammaRetinoid X Receptors

Identifiers

PMID36402763
PMCPMC9675755
OpenAlexW4309564149

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.