Evidence map›Paper›PMID 36400769›Full record

ArticleNature communications2022

The Heterochromatin protein 1 is a regulator in RNA splicing precision deficient in ulcerative colitis.

Jorge Mata-Garrido, Yao Xiang, Yunhua Chang-Marchand, Caroline Reisacher, Elisabeth Ageron, Ida Chiara Guerrera, Iñigo Casafont, Aurelia Bruneau, Claire Cherbuy, Xavier Treton and 8 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.9field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 23 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 6 institutions in 3 countries.

Jorge Mata-GarridoUniversité Paris Cité, INSERM, CNRS, Institut Necker Enfants Malades, F-75015, Paris, France.
Yao XiangUniversité Paris Cité, INSERM, CNRS, Institut Necker Enfants Malades, F-75015, Paris, France.
Yunhua Chang-MarchandUniversité Paris Cité, INSERM, CNRS, Institut Necker Enfants Malades, F-75015, Paris, France.
Caroline ReisacherUniversité Paris Cité, INSERM, CNRS, Institut Necker Enfants Malades, F-75015, Paris, France.
Elisabeth AgeronUniversité Paris Cité, INSERM, CNRS, Institut Necker Enfants Malades, F-75015, Paris, France.
Ida Chiara GuerreraProteomics platform Necker, Université Paris Cité-Structure Fédérative de Recherche Necker, INSERM US24/CNRS UAR3633, 75015, Paris, France.
Iñigo CasafontThe Nanomedicine Group, Institute Valdecilla-IDIVAL, 39011, Santander, Spain.ORCID 0000-0001-5691-6841
Aurelia BruneauMicalis Institute, Institut National de Recherche pour L'agriculture, L'alimentation et L'environnement (INRAE), AgroParisTech, Université Paris-Saclay, UMR1319, F-78350, Jouy-en-Josas, France.
Claire CherbuyMicalis Institute, Institut National de Recherche pour L'agriculture, L'alimentation et L'environnement (INRAE), AgroParisTech, Université Paris-Saclay, UMR1319, F-78350, Jouy-en-Josas, France.
Xavier TretonUMR-S 1149, Université Paris Cité, Inserm, Centre de recherche sur l'inflammation, équipe Inflammation intestinale, F-75018, Paris, France.
Anne DumayUMR-S 1149, Université Paris Cité, Inserm, Centre de recherche sur l'inflammation, équipe Inflammation intestinale, F-75018, Paris, France.
Eric Ogier-DenisUMR-S 1149, Université Paris Cité, Inserm, Centre de recherche sur l'inflammation, équipe Inflammation intestinale, F-75018, Paris, France.ORCID 0000-0002-0057-7593
Eric BatschéSorbonne Université, Institut de Biologie Paris-Seine (IBPS), CNRS Unit of Biological Adaptation and Ageing (B2A), Epigenetics and RNA metabolism in human diseases, 75005, Paris, France.
Mickael CostallatSorbonne Université, Institut de Biologie Paris-Seine (IBPS), CNRS Unit of Biological Adaptation and Ageing (B2A), Epigenetics and RNA metabolism in human diseases, 75005, Paris, France.
Gwladys RevêchonDepartment of Biosciences and Nutrition, Center for Innovative Medicine, Karolinska Institutet, SE-141 57, Huddinge, Sweden.ORCID 0000-0002-4824-6793
Maria ErikssonDepartment of Biosciences and Nutrition, Center for Innovative Medicine, Karolinska Institutet, SE-141 57, Huddinge, Sweden.ORCID 0000-0003-3233-2862
Christian MuchardtSorbonne Université, Institut de Biologie Paris-Seine (IBPS), CNRS Unit of Biological Adaptation and Ageing (B2A), Epigenetics and RNA metabolism in human diseases, 75005, Paris, France.ORCID 0000-0003-0145-4023
Laurence ArbibeUniversité Paris Cité, INSERM, CNRS, Institut Necker Enfants Malades, F-75015, Paris, France. laurence.arbibe@inserm.fr.ORCID 0000-0001-7102-346X
Centre National de la Recherche Scientifique · FRInserm · FRKarolinska Institutet · SEUniversité Paris-Saclay · FRDélégation Paris 5 · FRUniversidad de Cantabria · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Defects in RNA splicing have been linked to human disorders, but remain poorly explored in inflammatory bowel disease (IBD). Here, we report that expression of the chromatin and alternative splicing regulator HP1γ is reduced in ulcerative colitis (UC). Accordingly, HP1γ gene inactivation in the mouse gut epithelium triggers IBD-like traits, including inflammation and dysbiosis. In parallel, we find that its loss of function broadly increases splicing noise, favoring the usage of cryptic splice sites at numerous genes with functions in gut biology. This results in the production of progerin, a toxic splice variant of prelamin A mRNA, responsible for the Hutchinson-Gilford Progeria Syndrome of premature aging. Splicing noise is also extensively detected in UC patients in association with inflammation, with progerin transcripts accumulating in the colon mucosa. We propose that monitoring HP1γ activity and RNA splicing precision can help in the management of IBD and, more generally, of accelerated aging.

Indexed as

Colitis, UlcerativeProgeriaAnimalsChromobox Protein Homolog 5HumansInflammationMiceRNA SplicingChromobox Protein Homolog 5

Identifiers

PMID36400769
PMCPMC9674647
OpenAlexW4309474629

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.