Evidence map›Paper›PMID 36399262›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2023

Protocol for the Systematic Fixation, Circuit-Based Sampling, and Qualitative and Quantitative Neuropathological Analysis of Human Brain Tissue.

Caitlin S Latimer, Erica J Melief, Jeanelle Ariza-Torres, Kim Howard, Amanda R Keen, Lisa M Keene, Aimee M Schantz, Trevor M Sytsma, Angela M Wilson, Thomas J Grabowski and 6 more

Abstract read
PubMed Publisher
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
9.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Traumatic Microhemorrhages Are Not Synonymous With Axonal Injury.Annals of clinical and translational neurology · 2026
    Article
  6. Article
  7. Performance of novel tau antibodies across multiple modalities for Alzheimer's disease assessment.Alzheimer's & dementia : the journal of the Alzheimer's Association · 2025
    Article
  8. Article
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  11. Review
  12. Article
  13. Article
  14. Article
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  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 3 institutions in 1 country.

Caitlin S LatimerUniversity of Washington, Department of Laboratory Medicine and Pathology, Seattle, WA, USA.
Erica J MeliefUniversity of Washington, Department of Laboratory Medicine and Pathology, Seattle, WA, USA.
Jeanelle Ariza-TorresUniversity of Washington, Department of Laboratory Medicine and Pathology, Seattle, WA, USA.
Kim HowardUniversity of Washington, Department of Laboratory Medicine and Pathology, Seattle, WA, USA.
Amanda R KeenUniversity of Washington, Department of Laboratory Medicine and Pathology, Seattle, WA, USA.
Lisa M KeeneUniversity of Washington, Department of Laboratory Medicine and Pathology, Seattle, WA, USA.
Aimee M SchantzUniversity of Washington, Department of Laboratory Medicine and Pathology, Seattle, WA, USA.
Trevor M SytsmaUniversity of Washington, Department of Laboratory Medicine and Pathology, Seattle, WA, USA.
Angela M WilsonUniversity of Washington, Department of Laboratory Medicine and Pathology, Seattle, WA, USA.
Thomas J GrabowskiUniversity of Washington, Department of Radiology, Seattle, WA, USA.
Martin DarvasUniversity of Washington, Department of Laboratory Medicine and Pathology, Seattle, WA, USA.
Kristen Dams O'ConnorMount Sinai Hospital, Department of Neurology, New York, NY, USA.
Amber L NolanUniversity of Washington, Department of Laboratory Medicine and Pathology, Seattle, WA, USA.
Brian L EdlowMassachusetts General Hospital, Department of Neurology, Boston, MA, USA.
Christine L Mac DonaldUniversity of Washington, Department of Neurological Surgery, Seattle, WA, USA.
C Dirk KeeneUniversity of Washington, Department of Laboratory Medicine and Pathology, Seattle, WA, USA. cdkeene@uw.edu.
University of Washington · USMassachusetts General Hospital · USMount Sinai Hospital · US

Funding

University of Washington Alzheimer's Disease Research CenterP30AG066509 · NIA · UNIVERSITY OF WASHINGTON · PI ALI SHOJAIE · 2020 to 2026
$29.0M
Molecular Mechanisms of Synergistic TDP-43 and Tau Proteotoxicity in Alzheimer's DiseaseK08AG065426 · NIA · UNIVERSITY OF WASHINGTON · PI LATIMER, CAITLIN SHANNON · 2020 to 2024
$705k
NIA NIH HHS K08 AG065426NIA NIH HHS P30 AG066509
6 · The paper itself

Abstract

Human brain tissue has long been a critical resource for neuroanatomy and neuropathology, but with the advent of advanced imaging and molecular sequencing techniques, it has become possible to use human brain tissue to study, in great detail, the structural, molecular, and even functional underpinnings of human brain disease. In the century following the first description of Alzheimer's disease (AD), numerous technological advances applied to human tissue have enabled novel diagnostic approaches using diverse physical and molecular biomarkers, and many drug therapies have been tested in clinical trials (Schachter and Davis, Dialogues Clin Neurosci 2:91-100, 2000). The methods for brain procurement and tissue stabilization have remained somewhat consistently focused on formalin fixation and freezing. Although these methods have enabled research protocols of multiple modalities, new, more advanced technologies demand improved methodologies for the procurement, characterization, stabilization, and preparation of both normal and diseased human brain tissues. Here, we describe our current protocols for the procurement and characterization of fixed brain tissue, to enable systematic and precisely targeted diagnoses, and describe the novel, quantitative molecular, and neuroanatomical studies that broadly expand the use of formalin-fixed, paraffin-embedded (FFPE) tissue that will further our understanding of the mechanisms underlying human neuropathologies.

Indexed as

FormaldehydeSpecimen HandlingBrainHumansParaffin EmbeddingTissue FixationFormaldehydeAlzheimer’s diseaseBrain tissue fixationBrain tissue preparationDiagnosticsEx vivo MRI analysisHistologyHuman brain tissuePostmortemPostmortem brain tissueQuantitative neuropathologyTraumatic brain injuryWhole-slide imaging

Identifiers

PMID36399262
OpenAlexW4309491789

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.