Evidence map›Paper›PMID 36396992›Full record

ArticleBMC plant biology2022

Responses of transcriptome and metabolome in the roots of Pugionium cornutum (L.) Gaertn to exogenously applied phthalic acid.

Xiaoyan Zhang, Kezhen Ning, Zhongren Yang, Xiumei Huang, Hongtao Yu, Nana Fu, Xinyuan Qin, Lizhen Hao, Fenglan Zhang

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.3field-weighted citation impact, top 47% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 4 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Xiaoyan ZhangCollege of Horticultural and Plant Protection, Inner Mongolia Agricultural University, Inner Mongolia Key Laboratory of Wild Peculiar Vegetable Germplasm Resource and Germplasm Enhancement, Hohhot, 010011, China.
Kezhen NingCollege of Horticultural and Plant Protection, Inner Mongolia Agricultural University, Inner Mongolia Key Laboratory of Wild Peculiar Vegetable Germplasm Resource and Germplasm Enhancement, Hohhot, 010011, China.
Zhongren YangCollege of Horticultural and Plant Protection, Inner Mongolia Agricultural University, Inner Mongolia Key Laboratory of Wild Peculiar Vegetable Germplasm Resource and Germplasm Enhancement, Hohhot, 010011, China.
Xiumei HuangCollege of Horticultural and Plant Protection, Inner Mongolia Agricultural University, Inner Mongolia Key Laboratory of Wild Peculiar Vegetable Germplasm Resource and Germplasm Enhancement, Hohhot, 010011, China.
Hongtao YuCollege of Horticultural and Plant Protection, Inner Mongolia Agricultural University, Inner Mongolia Key Laboratory of Wild Peculiar Vegetable Germplasm Resource and Germplasm Enhancement, Hohhot, 010011, China.
Nana FuCollege of Horticultural and Plant Protection, Inner Mongolia Agricultural University, Inner Mongolia Key Laboratory of Wild Peculiar Vegetable Germplasm Resource and Germplasm Enhancement, Hohhot, 010011, China.
Xinyuan QinCollege of Horticultural and Plant Protection, Inner Mongolia Agricultural University, Inner Mongolia Key Laboratory of Wild Peculiar Vegetable Germplasm Resource and Germplasm Enhancement, Hohhot, 010011, China.
Lizhen HaoCollege of Horticultural and Plant Protection, Inner Mongolia Agricultural University, Inner Mongolia Key Laboratory of Wild Peculiar Vegetable Germplasm Resource and Germplasm Enhancement, Hohhot, 010011, China.
Fenglan ZhangCollege of Horticultural and Plant Protection, Inner Mongolia Agricultural University, Inner Mongolia Key Laboratory of Wild Peculiar Vegetable Germplasm Resource and Germplasm Enhancement, Hohhot, 010011, China. nmndzhangfenglan@imau.edu.cn.
Inner Mongolia Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe yield and quality of Pugionium cornutum (L.) Gaertn., a healthy, green vegetable with low sugar and high protein contents and high medicinal value, is severely affected by autotoxicity, which is a leading factor in the formation of plant disease. To help characterize the autotoxicity mechanism of P. cornutum (L.) Gaertn., we performed transcriptomic and metabolic analysis of the roots of P. cornutum (L.) Gaertn. response to phthalic acid, an autotoxin from P. cornutum (L.) Gaertn.

resultsIn this study, high-throughput sequencing of nine RNA-seq libraries generated from the roots.of P. cornutum (L.) Gaertn. under different phthalic acid treatments yielded 37,737 unigenes. In total, 1085 (703 upregulated and 382 downregulated) and 5998 (4385 upregulated and 1613 downregulated) DEGs were identified under 0.1 and 10 mmol·L

conclusionsAccumulation of autotoxins altered the metabolic balance in P. cornutum (L.) Gaertn. and influenced water absorption and carbon and nitrogen metabolism. These important results provide insights into the formation mechanisms of autotoxicity and for the subsequent development of new control measures to improve the production and quality of replanted plants.

Indexed as

BrassicaceaeTranscriptomeGene Expression Regulation, PlantHistidinolMetabolomePhthalic AcidsHistidinolphthalic acidPhthalic AcidsAutotoxicityMetabolitesPhthalic acidPugionium cornutum (L.) Gaertn.RNA-seq

Identifiers

PMID36396992
PMCPMC9670373
OpenAlexW4309466635

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.