Evidence map›Paper›PMID 36395348›Full record

ArticleChemistry (Weinheim an der Bergstrasse, Germany)2023

Caging of a Strongly Pairing Fluorescent Thymidine Analog with Soft Nucleophiles.

Juri Eyberg, Mark Ringenberg, Clemens Richert

Open access · hybridAbstract read
In one paragraph

Article in Chemistry (Weinheim an der Bergstrasse, Germany), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.3field-weighted citation impact, top 47% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Caging of a Strongly Pairing Fluorescent Thymidine Analog with Soft Nucleophiles.Chemistry (Weinheim an der Bergstrasse, Germany) · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Juri EybergInstitute of Organic Chemistry, University of Stuttgart, 70569, Stuttgart, Germany.
Mark RingenbergInstitute of Organic Chemistry, University of Stuttgart, 70569, Stuttgart, Germany.
Clemens RichertInstitute of Organic Chemistry, University of Stuttgart, 70569, Stuttgart, Germany.ORCID http://orcid.org/0000-0002-6907-0205
University of Stuttgart · DE

Funding

Deutsche Forschungsgemeinschaft RI 1063/18-1Volkswagen Foundation Az 92 768
6 · The paper itself

Abstract

Controlling the pairing strength of nucleobases in DNA through reactions with compounds found inside the cell is a formidable challenge. Here we report how a thiazolyl substituent turns a strongly pairing ethynylpyridone C-nucleoside into a reactive residue in oligonucleotides. The thiazolyl-bearing pyridone reacts with soft nucleophiles, such as glutathione, but not with hard nucleophiles like hydroxide or carbonate. The addition products pair much more weakly with adenine in a complementary strand than the starting material, and also change their fluorescence. This makes oligonucleotides containing the new deoxynucleoside interesting for controlled release. Due to its reactivity toward N, P, S, and Se-nucleophiles, and the visual signal accompanying chemical conversion, the fluorescent nucleotide reported here may also have applications in chemical biology, sensing and diagnostics.

Indexed as

NucleosidesNucleotidesBase PairingColoring AgentsOligonucleotidesThymidineColoring AgentsNucleosidesNucleotidesOligonucleotidesThymidinecagingDNAnucleosidesnucleotidesreporters

Identifiers

PMID36395348
PMCPMC10107337
OpenAlexW4309231267

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.