Evidence map›Paper›PMID 36395141›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2022

Somatic 9p24.1 alterations in HPV

Xin Zhao, Ezra E W Cohen, William N William, Joy J Bianchi, Jim P Abraham, Daniel Magee, David B Spetzler, J Silvio Gutkind, Ludmil B Alexandrov, Webster K Cavenee and 2 more

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
4.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 43 citations in OpenAlex.

  1. Trial
  2. Review
  3. Article
  4. PARP1 Suppression Drives ROS Resistance in Aneuploid Cancer Cells.bioRxiv : the preprint server for biology · 2026
    Article
  5. Signaling pathways and targeted interventions for precancers.Signal transduction and targeted therapy · 2026
    Review
  6. Review
  7. Interferon Epsilon Loss Is Elusive 9p21 Link to Immune-Cold Tumors, Resistant to Immune Checkpoint Therapy, and Endogenous CXCL9/10 Induction.Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer · 2025
    Review
  8. The Hallmarks of Aneuploidy in Cancer and Congenital Syndromes.Annual review of genomics and human genetics · 2025
    Review
  9. Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Review
  20. CDK4/6 Inhibition Sensitizes Intracranial Tumors to PD-1 Blockade in Preclinical Models of Brain Metastasis.Clinical cancer research : an official journal of the American Association for Cancer Research · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

Xin ZhaoDepartment of Biochemistry and Molecular Pharmacology, Institute for Systems Genetics, New York University Langone Health, New York, NY 10016.ORCID 0000-0001-8502-0139
Ezra E W CohenMoores Cancer Center, University of California San Diego, La Jolla, CA 92037.
William N WilliamThoracic/Head and Neck Medical Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030.
Joy J BianchiDepartment of Biochemistry and Molecular Pharmacology, Institute for Systems Genetics, New York University Langone Health, New York, NY 10016.ORCID 0000-0003-1268-9637
Jim P AbrahamResearch and Development, Caris Life Sciences, Irving, TX 75039.
Daniel MageeResearch and Development, Caris Life Sciences, Irving, TX 75039.
David B SpetzlerResearch and Development, Caris Life Sciences, Irving, TX 75039.
J Silvio GutkindMoores Cancer Center, University of California San Diego, La Jolla, CA 92037.ORCID 0000-0002-5150-4482
Ludmil B AlexandrovMoores Cancer Center, University of California San Diego, La Jolla, CA 92037.
Webster K CaveneeMoores Cancer Center, University of California San Diego, La Jolla, CA 92037.ORCID 0000-0003-3804-9179
Scott M LippmanMoores Cancer Center, University of California San Diego, La Jolla, CA 92037.
Teresa DavoliDepartment of Biochemistry and Molecular Pharmacology, Institute for Systems Genetics, New York University Langone Health, New York, NY 10016.ORCID 0000-0003-4116-9745
University of California San Diego · USCaris Life Sciences (United States) · USNYU Langone Health · USThe University of Texas MD Anderson Cancer Center · US

Funding

VIRAL MALIGNANCYP30CA023100 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Jesse Nodora · 1985 to 2026
$124.9M
Targeting the p53 pathway for reversal of oral premalignancyP50CA097007 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI MILLS, GORDON B. · 2002 to 2012
$26.1M
TARGETING COX-2 AND EGFR SIGNALING IN ORAL CARCINOGENESISP01CA106451 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI LIPPMAN, SCOTT M · 2004 to 2009
$8.3M
Targeting Signaling Vulnerabilities for Oral Cancer PreventionR01DE026644 · NIDCR · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Jorge Silvio Gutkind, SCOTT M LIPPMAN · 2017 to 2026
$4.7M
Deconstructing and targeting aneuploidy in human cancer - Resubmission - 1R37CA248631 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Teresa Davoli · 2021 to 2026
$2.9M
Studying the Role of Aneuploidy in Cancer Immune EvasionR00CA212621 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI DAVOLI, TERESA · 2018 to 2020
$704k
Cancer Research UK C5470/A27144NCI NIH HHS P01 CA106451NCI NIH HHS P30 CA023100NCI NIH HHS P50 CA097007NCI NIH HHS R00 CA212621NCI NIH HHS R37 CA248631NIDCR NIH HHS R01 DE026644
6 · The paper itself

Abstract

Somatic copy number alterations (SCNAs), generally (1) losses containing interferons and interferon-pathway genes, many on chromosome 9p, predict immune-cold, immune checkpoint therapy (ICT)-resistant tumors (2); however, genomic regions mediating these effects are unclear and probably tissue specific. Previously, 9p21.3 loss was found to be an early genetic driver of human papillomavirus-negative (HPV

Indexed as

Carcinoma, Squamous CellHead and Neck NeoplasmsPapillomavirus InfectionsHumansImmune Checkpoint InhibitorsSquamous Cell Carcinoma of Head and NeckTumor MicroenvironmentImmune Checkpoint Inhibitors9p219p24genomicshead neck cancerimmunotherapy

Identifiers

PMID36395141
PMCPMC9704728
OpenAlexW4309264246

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.