Evidence map›Paper›PMID 36394782›Full record

ArticleJournal of applied genetics2023

In silico and in vitro analysis of the impact of single substitutions within EXO-motifs on Hsa-MiR-1246 intercellular transfer in breast cancer cell.

Agnieszka Rybarczyk, Tomasz Lehmann, Ewa Iwańczyk-Skalska, Wojciech Juzwa, Andrzej Pławski, Kamil Kopciuch, Jacek Blazewicz, Paweł P Jagodziński

Open access · hybridAbstract read
In one paragraph

Article in Journal of applied genetics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.8field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 8 citations in OpenAlex.

  1. Beyond the Bubble: A Debate on microRNA Sorting Into Extracellular Vesicles.Laboratory investigation; a journal of technical methods and pathology · 2025
    Review
  2. Review
  3. Review
  4. Article
  5. Article
  6. Engineered EVs designed to target diseases of the CNS.Journal of controlled release : official journal of the Controlled Release Society · 2023
    Review
  7. Cell cycle arrest and apoptotic studies ofFrontiers in oncology · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 1 country.

Agnieszka RybarczykInstitute of Computing Science, Poznan University of Technology, Piotrowo 2, 60-965, Poznan, Poland. arybarczyk@cs.put.poznan.pl.ORCID http://orcid.org/0000-0003-4115-0737
Tomasz LehmannDepartment of Biochemistry and Molecular Biology, Poznan University of Medical Sciences, Fredry 10, 61-701, Poznan, Poland. tlehmann@ump.edu.pl.
Ewa Iwańczyk-SkalskaDepartment of Biochemistry and Molecular Biology, Poznan University of Medical Sciences, Fredry 10, 61-701, Poznan, Poland.
Wojciech JuzwaBiotechnology and Food Microbiology, Poznan University of Life Sciences, Wojska Polskiego 48, 60-627, Poznan, Poland.
Andrzej PławskiInstitute of Human Genetics, Polish Academy of Sciences, Strzeszyńska 32, 60-479, Poznan, Poland.
Kamil KopciuchInstitute of Computing Science, Poznan University of Technology, Piotrowo 2, 60-965, Poznan, Poland.
Jacek BlazewiczInstitute of Computing Science, Poznan University of Technology, Piotrowo 2, 60-965, Poznan, Poland.
Paweł P JagodzińskiDepartment of Biochemistry and Molecular Biology, Poznan University of Medical Sciences, Fredry 10, 61-701, Poznan, Poland.
Poznan University of Medical Sciences · PLPoznań University of Technology · PLInstitute of Bioorganic Chemistry, Polish Academy of Sciences · PLInstitute of Human Genetics · PLUniversity of Life Sciences in Poznań · PL

Funding

Narodowe Centrum Nauki 2020/04/X/ST6/00759
6 · The paper itself

Abstract

MiR-1246 has recently gained much attention and many studies have shown its oncogenic role in colorectal, breast, lung, and ovarian cancers. However, miR-1246 processing, stability, and mechanisms directing miR-1246 into neighbor cells remain still unclear. In this study, we aimed to determine the role of single-nucleotide substitutions within short exosome sorting motifs - so-called EXO-motifs: GGAG and GCAG present in miR-1246 sequence on its intracellular stability and extracellular transfer. We applied in silico methods such as 2D and 3D structure analysis and modeling of protein interactions. We also performed in vitro validation through the transfection of fluorescently labeled miRNA to MDA-MB-231 cells, which we analyzed by flow cytometry and fluorescent microscopy. Our results suggest that nucleotides alterations that disturbed miR-1246 EXO-motifs were able to modulate miRNA-1246 stability and its transfer level to the neighboring cells, suggesting that the molecular mechanism of RNA stability and intercellular transfer can be closely related.

Indexed as

Breast NeoplasmsMicroRNAsFemaleHumansMicroRNAsMIRN1246 microRNA, humanBreast cancerEXO-motifsExtracellular vesiclesMicroRNARNA structure prediction

Identifiers

PMID36394782
PMCPMC9837009
OpenAlexW4309245489

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.