Evidence map›Paper›PMID 36394327›Full record

ArticleApplied and environmental microbiology2022

Human Gut Metagenomes Encode Diverse GH156 Sialidases.

Evan Mann, Shahrokh Shekarriz, Michael G Surette

Open access · greenAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Analysis of metagenomic data.Nature reviews. Methods primers · 2025
    Article
  3. Review
  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Evan MannDepartment of Medicine, McMaster Universitygrid.25073.33grid.411657.0, Hamilton, Ontario, Canada.
Shahrokh ShekarrizDepartment of Biochemistry and Biomedical Sciences, McMaster Universitygrid.25073.33grid.411657.0, Hamilton, Ontario, Canada.
Michael G SuretteDepartment of Medicine, McMaster Universitygrid.25073.33grid.411657.0, Hamilton, Ontario, Canada.ORCID 0000-0003-0086-4995
McMaster University · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The intestinal lining is protected by a mucous barrier composed predominantly of complex carbohydrates. Gut microbes employ diverse glycoside hydrolases (GHs) to liberate mucosal sugars as a nutrient source to facilitate host colonization. Intensive catabolism of mucosal glycans, however, may contribute to barrier erosion, pathogen encroachment, and inflammation. Sialic acid is an acidic sugar featured at terminal positions of host glycans. Characterized sialidases from the microbiome belong to the GH33 family, according to CAZy (Carbohydrate-Active enZYmes Database). In 2018 a functional metagenomics screen using thermal spring DNA uncovered the founding member of the GH156 sialidase family, the presence of which has yet to be reported in the context of the human microbiome. A subset of GH156 sequences from the CAZy database containing key sialidase residues was used to build a hidden Markov model. HMMsearch against public databases revealed ~10× more putative GH156 sialidases than currently cataloged by CAZy. Represented phyla include

Indexed as

MetagenomeNeuraminidaseGastrointestinal MicrobiomeGlycoside HydrolasesHumansPolysaccharidesSialic AcidsGlycoside HydrolasesNeuraminidasePolysaccharidesSialic AcidsGH156glycoside hydrolasehuman microbiomeinflammatory bowel diseasemicrobiomesialic acidsialidase

Identifiers

PMID36394327
PMCPMC9746317
OpenAlexW4309245555

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.