Evidence map›Paper›PMID 36389094›Full record

ArticlePhysiology and molecular biology of plants : an international journal of functional plant biology2022

Transcriptome analysis of gene expression in the tomato leaf premature senescence mutant.

Fengmei Jin, Mingyan Hua, Lanfang Song, Shaojie Cui, Haibo Sun, Weidong Kong, Zhiyu Hao

Open access · greenAbstract read
In one paragraph

Article in Physiology and molecular biology of plants : an international journal of functional plant biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.4field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Fengmei JinTianjin Academy of Agriculture Sciences, Tianjin, 300192 China.ORCID 0000-0002-4315-8882
Mingyan HuaTianjin Academy of Agriculture Sciences, Tianjin, 300192 China.
Lanfang SongTianjin Academy of Agriculture Sciences, Tianjin, 300192 China.
Shaojie CuiTianjin Academy of Agriculture Sciences, Tianjin, 300192 China.
Haibo SunTianjin Academy of Agriculture Sciences, Tianjin, 300192 China.
Weidong KongTianjin Academy of Agriculture Sciences, Tianjin, 300192 China.
Zhiyu HaoTianjin Academy of Agriculture Sciences, Tianjin, 300192 China.
Tianjin Academy of Environmental Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Premature senescence of leaves can critically influence tomato yield and quality. In this study, the leaf premature senescence mutant MT318 was a spontaneous mutant and was controlled by a single recessive nuclear gene. The maximum photochemical efficiency (Fv/Fm), superoxide dismutase (SOD), and chlorophyll content in the leaves of mutant MT318 gradually decreased, while malondialdehyde (MDA) content significantly increased. Under the level 2 category, Gene Ontology (GO) enrichment analysis indicated that 45 terms were enriched, comprising 22 in biological process, 12 in cellular component, and 11 in molecular function. Genes are mainly involved in the metabolic processes (696 differentially expressed genes, DEGs), cellular processes (573 DEGs), single-organism processes (503 DEGs), and catalytic activity (675 DEGs). Kyoto Encyclopedia of Genes and Genomes pathway analysis demonstrated that the 4 pathways with the largest number of genes were biosynthesis of secondary metabolites, plant-pathogen interaction, plant hormone signal transduction, and MAPK signaling pathway-plant. The 'plant hormone signal transduction' pathway was the most significantly enriched at the T2 stage. Pearson correlation analysis showed that the auxin regulatory pathway and SA signal transduction pathway may play important roles. These results not only lay the foundation for the further cloning and functional analysis of the MT318 premature senescence gene but also provide a reference for the study of tomato leaf senescence. Supplementary Information: The online version contains supplementary material available at 10.1007/s12298-022-01223-2.

Indexed as

MutantRNA-SeqSenescenceSolanum lycopersicum

Identifiers

PMID36389094
PMCPMC9530104
OpenAlexW4293387743

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.