Evidence map›Paper›PMID 36388027›Full record

ReviewTranslational cancer research2022

Utilization of model-agnostic explainable artificial intelligence frameworks in oncology: a narrative review.

Colton Ladbury, Reza Zarinshenas, Hemal Semwal, Andrew Tam, Nagarajan Vaidehi, Andrei S Rodin, An Liu, Scott Glaser, Ravi Salgia, Arya Amini

Abstract readReview
In one paragraph

Review in Translational cancer research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
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  9. Article
  10. Article
  11. Article
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  14. Review
  15. Machine Learning-Based Evaluation of Combined EBV and CMV Serostatus as Predictors of Post-Transplant Lymphoproliferative Disorder.Transplant international : official journal of the European Society for Organ Transplantation · 2026
    Article
  16. Review
  17. Article
  18. Article
  19. Observational
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

Colton LadburyDepartment of Radiation Oncology, City of Hope National Medical Center, Duarte, CA, USA.
Reza ZarinshenasDepartment of Radiation Oncology, City of Hope National Medical Center, Duarte, CA, USA.
Hemal SemwalDepartments of Bioengineering and Integrated Biology and Physiology, University of California Los Angeles, Los Angeles, CA, USA.
Andrew TamDepartment of Radiation Oncology, City of Hope National Medical Center, Duarte, CA, USA.
Nagarajan VaidehiDepartment of Computational and Quantitative Medicine, City of Hope National Medical Center, Duarte, CA, USA.
Andrei S RodinDepartment of Computational and Quantitative Medicine, City of Hope National Medical Center, Duarte, CA, USA.
An LiuDepartment of Radiation Oncology, City of Hope National Medical Center, Duarte, CA, USA.
Scott GlaserDepartment of Radiation Oncology, City of Hope National Medical Center, Duarte, CA, USA.
Ravi SalgiaDepartment of Medical Oncology, City of Hope National Medical Center, Duarte, CA, USA.
Arya AminiDepartment of Radiation Oncology, City of Hope National Medical Center, Duarte, CA, USA.

Funding

Experimental-Computational Synthesis of Altered Immune Signaling in Breast CancerU01CA232216 · NCI · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI LEE, PETER POON-HANG, ROCKNE, RUSSELL CHRISTIAN · 2019 to 2023
$3.0M
An integrated toolkit combining computational systems biology techniques with molecular dynamics simulations to delineate functionality of GPCRsR01LM013876 · NLM · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI RODIN, ANDREI, VAIDEHI, NAGARAJAN · 2022 to 2025
$1.5M
Scalable Bayesian Network analysis of multimodal FACS and SUMOylation data, with generalization to other big mixed biological datasetsR01LM013138 · NLM · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI RODIN, ANDREI · 2020 to 2022
$776k
NCI NIH HHS U01 CA232216NLM NIH HHS R01 LM013138NLM NIH HHS R01 LM013876
6 · The paper itself

Abstract

Background and Objective: Machine learning (ML) models are increasingly being utilized in oncology research for use in the clinic. However, while more complicated models may provide improvements in predictive or prognostic power, a hurdle to their adoption are limits of model interpretability, wherein the inner workings can be perceived as a "black box". Explainable artificial intelligence (XAI) frameworks including Local Interpretable Model-agnostic Explanations (LIME) and SHapley Additive exPlanations (SHAP) are novel, model-agnostic approaches that aim to provide insight into the inner workings of the "black box" by producing quantitative visualizations of how model predictions are calculated. In doing so, XAI can transform complicated ML models into easily understandable charts and interpretable sets of rules, which can give providers with an intuitive understanding of the knowledge generated, thus facilitating the deployment of such models in routine clinical workflows. Methods: We performed a comprehensive, non-systematic review of the latest literature to define use cases of model-agnostic XAI frameworks in oncologic research. The examined database was PubMed/MEDLINE. The last search was run on May 1, 2022. Key Content and Findings: In this review, we identified several fields in oncology research where ML models and XAI were utilized to improve interpretability, including prognostication, diagnosis, radiomics, pathology, treatment selection, radiation treatment workflows, and epidemiology. Within these fields, XAI facilitates determination of feature importance in the overall model, visualization of relationships and/or interactions, evaluation of how individual predictions are produced, feature selection, identification of prognostic and/or predictive thresholds, and overall confidence in the models, among other benefits. These examples provide a basis for future work to expand on, which can facilitate adoption in the clinic when the complexity of such modeling would otherwise be prohibitive. Conclusions: Model-agnostic XAI frameworks offer an intuitive and effective means of describing oncology ML models, with applications including prognostication and determination of optimal treatment regimens. Using such frameworks presents an opportunity to improve understanding of ML models, which is a critical step to their adoption in the clinic.

Indexed as

Explainable artificial intelligence (XAI)Local Interpretable Model-agnostic Explanations (LIME)machine learning (ML)SHapley Additive exPlanations (SHAP)

Identifiers

PMID36388027
PMCPMC9641128

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.