Evidence map›Paper›PMID 36387532›Full record

ArticleHeliyon2022

Genome-wide mutational analysis of Chikungunya strains from 2016 to 2017 outbreak of central India: An attempt to elucidate the immunological basis for outbreak.

Sudheer Gupta, Ashvini Yadav, Sam Stubbs, Simon Frost, Kudsia Ansari, Ram Kumar Nema, Shashwati Nema, Debasis Biswas

Open access · goldAbstract read
In one paragraph

Article in Heliyon, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 1 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Sudheer GuptaRegional Virology Laboratory, All India Institute of Medical Sciences, Bhopal, India.
Ashvini YadavRegional Virology Laboratory, All India Institute of Medical Sciences, Bhopal, India.
Sam StubbsDepartment of Veterinary Medicine, University of Cambridge, UK.
Simon FrostDepartment of Veterinary Medicine, University of Cambridge, UK.
Kudsia AnsariRegional Virology Laboratory, All India Institute of Medical Sciences, Bhopal, India.
Ram Kumar NemaRegional Virology Laboratory, All India Institute of Medical Sciences, Bhopal, India.
Shashwati NemaRegional Virology Laboratory, All India Institute of Medical Sciences, Bhopal, India.
Debasis BiswasRegional Virology Laboratory, All India Institute of Medical Sciences, Bhopal, India.
All India Institute of Medical Sciences Bhopal · INUniversity of Cambridge · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chikungunya re-emerged in India in 2016-2017, as the first major outbreak since 2006. In our previous study, we undertook partial E1 gene sequencing and phylogenetic/mutational analysis of strains from the 2016-2017 outbreak of Chikungunya in central India and reported important mutations associated with the outbreak. This study was performed to validate the previous findings and to identify key mutations that had emerged throughout the entire genome of Chikungunya virus that could be driving the enormity of this outbreak. The phylogenetic analysis revealed the closeness of our isolates with ECSA genotype, specifically with the Singapore 2015 strain. We found 2 mutations in C and E2 genes, which were present in our isolates but were non-existent during the period of 2010-2016. Furthermore, re-emergence of Arg amino acid in place of stop codon in nsP3 gene and Thr at E2:312 positions was observed after 2011. We also used computational tools to assess the effect of the identified mutations on the T cell and B cell epitopes that could influence the protective immune response against this infection.

Indexed as

ChikungunyaGenome sequencingNanoporeOutbreakPhylogenetics

Identifiers

PMID36387532
PMCPMC9647445
OpenAlexW4308344921

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.