Evidence map›Paper›PMID 36386965›Full record

ArticleFrontiers in psychiatry2022

Differential H3K9me2 heterochromatin levels and concordant mRNA expression in postmortem brain tissue of individuals with schizophrenia, bipolar, and controls.

Hooriyah S Rizavi, Kayla A Chase, Chunyu Liu, Hannah Gavin, Cherise Rosen, Cuihua Xia, Alessandro Guidotti, Rajiv P Sharma

Open access · goldAbstract read
In one paragraph

Article in Frontiers in psychiatry, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 51% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Hooriyah S RizaviDepartment of Psychiatry, The Psychiatric Institute, University of Illinois at Chicago, Chicago, IL, United States.
Kayla A ChaseDepartment of Biochemistry and Molecular Biology, University of Illinois at Chicago, Chicago, IL, United States.
Chunyu LiuJesse Brown Veterans Affairs Medical Center, Chicago, IL, United States.
Hannah GavinDepartment of Psychiatry, The Psychiatric Institute, University of Illinois at Chicago, Chicago, IL, United States.
Cherise RosenDepartment of Psychiatry, The Psychiatric Institute, University of Illinois at Chicago, Chicago, IL, United States.
Cuihua XiaSchool of Life Sciences, Central South University, Changsha, China.
Alessandro GuidottiDepartment of Psychiatry, The Psychiatric Institute, University of Illinois at Chicago, Chicago, IL, United States.
Rajiv P SharmaDepartment of Psychiatry, The Psychiatric Institute, University of Illinois at Chicago, Chicago, IL, United States.
University of Illinois Chicago · USCentral South University · CNJesse Brown VA Medical Center · US

Funding

Genetic variants affect brain gene expression and risks of psychiatric disordersU01MH103340 · NIMH · UPSTATE MEDICAL UNIVERSITY · PI LIU, CHUNYU, RZHETSKY, ANDREY · 2014 to 2017
$4.3M
1/2 Measuring translational dynamics and the proteome to identify potential brain biomarkers for psychiatric diseaseR01MH110920 · NIMH · UPSTATE MEDICAL UNIVERSITY · PI LIU, CHUNYU · 2016 to 2019
$2.0M
1/3 High-resolution mapping of cell type-specific DNA (hydroxy)methylation in the human brain during postnatal development and in psychiatric disease.U01MH122591 · NIMH · UPSTATE MEDICAL UNIVERSITY · PI LIU, CHUNYU · 2020 to 2022
$483k
NIMH NIH HHS R01 MH110920NIMH NIH HHS U01 MH103340NIMH NIH HHS U01 MH122591
6 · The paper itself

Abstract

The existence of repressive and durable chromatin assemblies along gene promoters or networks, especially in the brain, is of theoretical and therapeutic relevance in a subset of individuals diagnosed with schizophrenia who experience a chronic, persistent, and treatment-resistant trajectory. We used chromatin immunoprecipitation followed by deep sequencing (ChIP-Seq) to generate an epigenomic map that includes differential sites occupied by di-methylated lysine 9 of histone 3 (H3K9me2), a repressive modification that is yet unexplored in human postmortem brain tissue. We have discovered over 150 significantly differential promoter sites in the postmortem prefrontal cortex tissue of individuals diagnosed with schizophrenia (

Indexed as

ChIP-Seqgene expressionheterochromatinhistone methylationpostmortem brainschizophrenia

Identifiers

PMID36386965
PMCPMC9644155
OpenAlexW4307553315

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.