Evidence map›Paper›PMID 36386687›Full record

ArticleFrontiers in microbiology2022

Metabolome patterns identify active dechlorination in bioaugmentation consortium SDC-9™.

Amanda L May, Yongchao Xie, Fadime Kara Murdoch, Mandy M Michalsen, Frank E Löffler, Shawn R Campagna

Abstract read
In one paragraph

Article in Frontiers in microbiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Amanda L MayCenter for Environmental Biotechnology, University of Tennessee, Knoxville, TN, United States.
Yongchao XieDepartment of Civil and Environmental Engineering, Tickle College of Engineering, University of Tennessee, Knoxville, TN, United States.
Fadime Kara MurdochCenter for Environmental Biotechnology, University of Tennessee, Knoxville, TN, United States.
Mandy M MichalsenEnvironmental Laboratory, U.S. Army Engineer Research and Development Center, Vicksburg, MS, United States.
Frank E LöfflerCenter for Environmental Biotechnology, University of Tennessee, Knoxville, TN, United States.
Shawn R CampagnaDepartment of Chemistry, College of Arts and Sciences, The University of Tennessee, Knoxville, TN, United States.

Funding

Expanding the Tool Box: Environmental Metabolomics Improves Decision Making and Management of Contaminated (Superfund) SitesR43ES030669 · NIEHS · MICROBIAL INSIGHTS, INC. · PI TAGGART, DORA M · 2019 to 2020
$205k
NIEHS NIH HHS R43 ES030669
6 · The paper itself

Abstract

Ultra-high performance liquid chromatography-high-resolution mass spectrometry (UPHLC-HRMS) is used to discover and monitor single or sets of biomarkers informing about metabolic processes of interest. The technique can detect 1000's of molecules (i.e., metabolites) in a single instrument run and provide a measurement of the global metabolome, which could be a fingerprint of activity. Despite the power of this approach, technical challenges have hindered the effective use of metabolomics to interrogate microbial communities implicated in the removal of priority contaminants. Herein, our efforts to circumvent these challenges and apply this emerging systems biology technique to microbiomes relevant for contaminant biodegradation will be discussed. Chlorinated ethenes impact many contaminated sites, and detoxification can be achieved by organohalide-respiring bacteria, a process currently assessed by quantitative gene-centric tools (e.g., quantitative PCR). This laboratory study monitored the metabolome of the SDC-9™ bioaugmentation consortium during

Indexed as

biomarkersbioremediationconsortium SDC-9™Dehalococcoidiaenvironmental monitoringmetabolomicsreductive dechlorination

Identifiers

PMID36386687
PMCPMC9641191

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.