Evidence map›Paper›PMID 36385237›Full record

ArticleNature communications2022

Open-channel structure of a pentameric ligand-gated ion channel reveals a mechanism of leaflet-specific phospholipid modulation.

John T Petroff, Noah M Dietzen, Ezry Santiago-McRae, Brett Deng, Maya S Washington, Lawrence J Chen, K Trent Moreland, Zengqin Deng, Michael Rau, James A J Fitzpatrick and 5 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
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  3. Review
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  7. Article
  8. Massive Activation of GABABiomolecules · 2025
    Review
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  12. Article
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  15. Article
  16. Article
  17. Article
  18. Alchemical Free Energy Calculations on Membrane-Associated Proteins.Journal of chemical theory and computation · 2023
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 2 countries.

John T PetroffDepartment of Anesthesiology, Washington University School of Medicine, Saint Louis, MO, USA.
Noah M DietzenDepartment of Anesthesiology, Washington University School of Medicine, Saint Louis, MO, USA.
Ezry Santiago-McRaeCenter for Computational and Integrative Biology, Rutgers University, Camden, NJ, USA.ORCID 0000-0002-0930-8277
Brett DengDepartment of Anesthesiology, Washington University School of Medicine, Saint Louis, MO, USA.
Maya S WashingtonDepartment of Anesthesiology, Washington University School of Medicine, Saint Louis, MO, USA.
Lawrence J ChenDepartment of Anesthesiology, Washington University School of Medicine, Saint Louis, MO, USA.
K Trent MorelandDepartment of Anesthesiology, Washington University School of Medicine, Saint Louis, MO, USA.ORCID 0000-0002-8996-832X
Zengqin DengDepartment of Cell Biology and Physiology, Washington University School of Medicine, Saint Louis, MO, USA.
Michael RauCenter for Cellular Imaging, Washington University School of Medicine, Saint Louis, MO, USA.ORCID 0000-0001-5170-2000
James A J FitzpatrickDepartment of Cell Biology and Physiology, Washington University School of Medicine, Saint Louis, MO, USA.ORCID 0000-0002-7907-3602
Peng YuanDepartment of Cell Biology and Physiology, Washington University School of Medicine, Saint Louis, MO, USA.ORCID 0000-0002-5660-225X
Thomas T JosephDepartment of Anesthesiology and Critical Care, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.ORCID 0000-0003-1323-3244
Jérôme HéninLaboratoire de Biochimie Théorique, Institut de Biologie Physico-Chimique, Université Paris Cité, CNRS UPR 9080, Paris, France.ORCID 0000-0003-2540-4098
Grace BranniganCenter for Computational and Integrative Biology, Rutgers University, Camden, NJ, USA.ORCID 0000-0001-8949-2694
Wayland W L ChengDepartment of Anesthesiology, Washington University School of Medicine, Saint Louis, MO, USA. wayland.cheng@wustl.edu.ORCID 0000-0002-9529-9820
Washington University in St. Louis · USRutgers, The State University of New Jersey · USCentre National de la Recherche Scientifique · FRUniversity of Pennsylvania · US

Funding

Washington University Center for Cellular ImagingP30CA091842 · NCI · WASHINGTON UNIVERSITY · PI TIMOTHY J. EBERLEIN · 2001 to 2026
$128.0M
WU INSTITUTE OF CLINICAL AND TRANSLATIONAL SCIENCESUL1TR002345 · NCATS · WASHINGTON UNIVERSITY · PI William G. Powderly · 2017 to 2026
$97.8M
Lipid Modulation of Ligand-Gated Ion ChannelsR35GM137957 · NIGMS · WASHINGTON UNIVERSITY · PI Wayland Wing-Lun Cheng · 2020 to 2026
$2.9M
Efficient prediction of transmembrane binding sites for anesthetic ligandsK08GM139031 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI JOSEPH, THOMAS THENGANPALLIL · 2020 to 2024
$984k
Structural determinants of lipid modulation of ligand-gated ion channelsF32GM139351 · NIGMS · WASHINGTON UNIVERSITY · PI PETROFF , JOHN T · 2020 to 2022
$134k
NCATS NIH HHS UL1 TR002345NCI NIH HHS P30 CA091842NIGMS NIH HHS F32 GM139351NIGMS NIH HHS K08 GM139031NIGMS NIH HHS R35 GM137957
6 · The paper itself

Abstract

Pentameric ligand-gated ion channels (pLGICs) mediate synaptic transmission and are sensitive to their lipid environment. The mechanism of phospholipid modulation of any pLGIC is not well understood. We demonstrate that the model pLGIC, ELIC (Erwinia ligand-gated ion channel), is positively modulated by the anionic phospholipid, phosphatidylglycerol, from the outer leaflet of the membrane. To explore the mechanism of phosphatidylglycerol modulation, we determine a structure of ELIC in an open-channel conformation. The structure shows a bound phospholipid in an outer leaflet site, and structural changes in the phospholipid binding site unique to the open-channel. In combination with streamlined alchemical free energy perturbation calculations and functional measurements in asymmetric liposomes, the data support a mechanism by which an anionic phospholipid stabilizes the activated, open-channel state of a pLGIC by specific, state-dependent binding to this site.

Indexed as

Ligand-Gated Ion ChannelsBinding SitesLiposomesPhosphatidylglycerolsPhospholipidsLigand-Gated Ion ChannelsLiposomesPhosphatidylglycerolsPhospholipids

Identifiers

PMID36385237
PMCPMC9668969
OpenAlexW4309148716

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.