Evidence map›Paper›PMID 36384566›Full record

ArticlePlant methods2022

High-throughput interspecies profiling of acidic plant hormones using miniaturised sample processing.

Jitka Široká, Federica Brunoni, Aleš Pěnčík, Václav Mik, Asta Žukauskaitė, Miroslav Strnad, Ondřej Novák, Kristýna Floková

Abstract read
In one paragraph

Article in Plant methods, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

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  9. Multi-omics signatures of diverse plant callus cultures.Plant biotechnology (Tokyo, Japan) · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Jitka ŠirokáLaboratory of Growth Regulators, Institute of Experimental Botany of the Czech Academy of Sciences & Palacký University, Šlechtitelů 27, 78371, Olomouc, Czech Republic. jitka.siroka@upol.cz.
Federica BrunoniLaboratory of Growth Regulators, Institute of Experimental Botany of the Czech Academy of Sciences & Palacký University, Šlechtitelů 27, 78371, Olomouc, Czech Republic.
Aleš PěnčíkLaboratory of Growth Regulators, Institute of Experimental Botany of the Czech Academy of Sciences & Palacký University, Šlechtitelů 27, 78371, Olomouc, Czech Republic.
Václav MikDepartment of Experimental Biology, Faculty of Science, Palacký University, Šlechtitelů 27, 78371, Olomouc, Czech Republic.
Asta ŽukauskaitėDepartment of Chemical Biology, Faculty of Science, Palacký University, Šlechtitelů 27, 78371, Olomouc, Czech Republic.
Miroslav StrnadLaboratory of Growth Regulators, Institute of Experimental Botany of the Czech Academy of Sciences & Palacký University, Šlechtitelů 27, 78371, Olomouc, Czech Republic.
Ondřej NovákLaboratory of Growth Regulators, Institute of Experimental Botany of the Czech Academy of Sciences & Palacký University, Šlechtitelů 27, 78371, Olomouc, Czech Republic.
Kristýna FlokováLaboratory of Growth Regulators, Institute of Experimental Botany of the Czech Academy of Sciences & Palacký University, Šlechtitelů 27, 78371, Olomouc, Czech Republic.

Funding

Grantová Agentura České Republiky 19-10464YPalacký University Olomouc Young Researcher grant JG_2020_002
6 · The paper itself

Abstract

backgroundAcidic phytohormones are small molecules controlling many physiological functions in plants. A comprehensive picture of their profiles including the active forms, precursors and metabolites provides an important insight into ongoing physiological processes and is essential for many biological studies performed on plants.

resultsA high-throughput sample preparation method for liquid chromatography-tandem mass spectrometry determination of 25 acidic phytohormones classed as auxins, jasmonates, abscisates and salicylic acid was optimised. The method uses a small amount of plant tissue (less than 10 mg fresh weight) and acidic extraction in 1 mol/L formic acid in 10% aqueous methanol followed by miniaturised purification on reverse phase sorbent accommodated in pipette tips organised in a 3D printed 96-place interface, capable of processing 192 samples in one run. The method was evaluated in terms of process efficiency, recovery and matrix effects as well as establishing validation parameters such as accuracy and precision. The applicability of the method in relation to the amounts of sample collected from distantly related plant species was evaluated and the results for phytohormone profiles are discussed in the context of literature reports.

conclusionThe method developed enables high-throughput profiling of acidic phytohormones with minute amounts of plant material, and it is suitable for large scale interspecies studies.

Indexed as

3D printingEvolutionarily distant plant speciesHigh-throughputIn-tip microSPELiquid chromatographyMass spectrometryMiniaturisationPlant hormones

Identifiers

PMID36384566
PMCPMC9670418

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.