Evidence map›Paper›PMID 36383663›Full record

ArticleScience advances2022

BCG vaccinations drive epigenetic changes to the human T cell receptor: Restored expression in type 1 diabetes.

Hiroyuki Takahashi, Willem M Kühtreiber, Ryan C Keefe, Amanda H Lee, Anna Aristarkhova, Hans F Dias, Nathan Ng, Kacie J Nelson, Stephanie Bien, Danielle Scheffey and 1 more

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Hiroyuki TakahashiImmunobiology Department, Massachusetts General Hospital and Harvard Medical School, Boston, MA 02129, USA.ORCID 0000-0001-6113-5791
Willem M KühtreiberImmunobiology Department, Massachusetts General Hospital and Harvard Medical School, Boston, MA 02129, USA.ORCID 0000-0002-5717-5915
Ryan C KeefeImmunobiology Department, Massachusetts General Hospital and Harvard Medical School, Boston, MA 02129, USA.ORCID 0000-0001-8766-1669
Amanda H LeeImmunobiology Department, Massachusetts General Hospital and Harvard Medical School, Boston, MA 02129, USA.ORCID 0000-0001-8902-7899
Anna AristarkhovaImmunobiology Department, Massachusetts General Hospital and Harvard Medical School, Boston, MA 02129, USA.ORCID 0000-0002-7304-9935
Hans F DiasImmunobiology Department, Massachusetts General Hospital and Harvard Medical School, Boston, MA 02129, USA.
Nathan NgImmunobiology Department, Massachusetts General Hospital and Harvard Medical School, Boston, MA 02129, USA.ORCID 0000-0001-7504-7821
Kacie J NelsonImmunobiology Department, Massachusetts General Hospital and Harvard Medical School, Boston, MA 02129, USA.
Stephanie BienAdaptive Biotechnologies, Seattle, WA 98109, USA.ORCID 0000-0002-8713-4583
Danielle ScheffeyAdaptive Biotechnologies, Seattle, WA 98109, USA.
Denise L FaustmanImmunobiology Department, Massachusetts General Hospital and Harvard Medical School, Boston, MA 02129, USA.ORCID 0000-0003-0308-8688
Harvard University · USAdaptive Biotechnologies (United States) · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The BCG (Bacille Calmette-Guérin) vaccine, introduced 100 years ago for tuberculosis prevention, has emerging therapeutic off-target benefits for autoimmunity. In randomized controlled trials, BCG vaccinations were shown to gradually improve two autoimmune conditions, type 1 diabetes (T1D) and multiple sclerosis. Here, we investigate the mechanisms behind the autoimmune benefits and test the hypothesis that this microbe synergy could be due to an impact on the host T cell receptor (TCR) and TCR signal strength. We show a quantitative TCR defect in T1D subjects consisting of a marked reduction in receptor density on T cells due to hypermethylation of TCR-related genes. BCG corrects this defect gradually over 3 years by demethylating hypermethylated sites on members of the TCR gene family. The TCR sequence is not modified through recombination, ruling out a qualitative defect. These findings support an underlying density defect in the TCR affecting TCR signal strength in T1D.

Identifiers

PMID36383663
PMCPMC9668301
OpenAlexW4309243588

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.