Evidence map›Paper›PMID 36383007›Full record

ArticleJournal of bacteriology2022

Lack of Specificity in

Sol Choi, Chi Ho Chan, Daniel R Bond

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.6field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 22 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Comparative transcriptomics of closely relatedFrontiers in microbiology · 2026
    Article
  5. Article
  6. Synthesis of Palladium Nanoparticles by Electrode-RespiringACS biomaterials science & engineering · 2025
    Article
  7. Review
  8. Article
  9. Isolation and genomic analysis of "Applied and environmental microbiology · 2024
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Exploring oxidative stress pathways inFrontiers in microbiology · 2023
    Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Sol ChoiDepartment of Biochemistry, Molecular Biology, and Biophysics, University of Minnesotagrid.17635.36, Minneapolis, Minnesota, USA.ORCID 0000-0002-0033-0734
Chi Ho ChanBioTechnology Institute, University of Minnesotagrid.17635.36, Saint Paul, Minnesota, USA.ORCID 0000-0002-6596-3436
Daniel R BondBioTechnology Institute, University of Minnesotagrid.17635.36, Saint Paul, Minnesota, USA.ORCID 0000-0001-8083-7107
University of Minnesota · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Reduction of extracellular acceptors requires electron transfer across the periplasm. In Geobacter sulfurreducens, three separate cytoplasmic membrane cytochromes are utilized depending on redox potential, and at least five cytochrome conduits span the outer membrane. Because G. sulfurreducens produces 5 structurally similar triheme periplasmic cytochromes (PpcABCDE) that differ in expression level, midpoint potential, and heme biochemistry, many hypotheses propose distinct periplasmic carriers could be used for specific redox potentials, terminal acceptors, or growth conditions. Using a panel of marker-free single, quadruple, and quintuple mutants, little support for these models could be found. Three quadruple mutants containing only one paralog (PpcA, PpcB, and PpcD) reduced Fe(III) citrate and Fe(III) oxide at the same rate and extent, even though PpcB and PpcD were at much lower periplasmic levels than PpcA. Mutants containing only PpcC and PpcE showed defects, but these cytochromes were nearly undetectable in the periplasm. When expressed sufficiently, PpcC and PpcE supported wild-type Fe(III) reduction. PpcA and PpcE from

Indexed as

GeobacterCytochromesElectronsElectron TransportFerric CompoundsOxidation-ReductionPeriplasmCytochromesFerric Compoundscytochromeelectron transferGeobacteriron reductionperiplasm

Identifiers

PMID36383007
PMCPMC9765071
OpenAlexW4309166004

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.