Evidence map›Paper›PMID 36382881›Full record

ArticleProtein science : a publication of the Protein Society2022

The role of oligomerization in the optimization of cyclohexadienyl dehydratase conformational dynamics and catalytic activity.

Nicholas J East, Ben E Clifton, Colin J Jackson, Joe A Kaczmarski

Open access · hybridAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.9field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 12 citations in OpenAlex.

  1. Buttressing ligand-binding pockets in de novo designed NTF2-like domains.Protein science : a publication of the Protein Society · 2025
    Article
  2. ACS omega · 2025
    Article
  3. From duplication to fusion: Expanding Dayhoff's model of protein evolution.Protein science : a publication of the Protein Society · 2025
    Review
  4. Review
  5. Article
  6. Article
  7. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Nicholas J EastARC Centre of Excellence in Synthetic Biology, Australian National University, Canberra, Australia.ORCID 0000-0002-4471-449X
Ben E CliftonProtein Engineering and Evolution Unit, Okinawa Institute of Science and Technology, Okinawa, Japan.ORCID 0000-0002-7469-7424
Colin J JacksonARC Centre of Excellence in Synthetic Biology, Australian National University, Canberra, Australia.ORCID 0000-0001-6150-3822
Joe A KaczmarskiARC Centre of Excellence in Synthetic Biology, Australian National University, Canberra, Australia.ORCID 0000-0001-8549-0122
Australian National University · AUOkinawa Institute of Science and Technology Graduate University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The emergence of oligomers is common during the evolution and diversification of protein families, yet the selective advantage of oligomerization is often cryptic or unclear. Oligomerization can involve the formation of isologous head-to-head interfaces (e.g., in symmetrical dimers) or heterologous head-to-tail interfaces (e.g., in cyclic complexes), the latter of which is less well studied and understood. In this work, we retrace the emergence of the trimeric form of cyclohexadienyl dehydratase from Pseudomonas aeruginosa (PaCDT) by introducing residues that form the PaCDT trimer-interfaces into AncCDT-5 (a monomeric reconstructed ancestor of PaCDT). We find that single interface mutations can switch the oligomeric state of the variants and that trimerization corresponds with a reduction in the K

Indexed as

Molecular Dynamics SimulationPrephenate DehydrataseMolecular ConformationProtein MultimerizationPseudomonas aeruginosacyclohexadienyl dehydratasePrephenate Dehydratasecyclohexadienyl dehydrataseenzyme evolutionmolecular dynamics simulationsoligomerizationprotein evolutionsize-exclusion chromatographytrimerization

Identifiers

PMID36382881
PMCPMC9703590
OpenAlexW4309124384

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.