Evidence map›Paper›PMID 36382770›Full record

ArticleEMBO reports2023

Nuclease-independent functions of RAG1 direct distinct DNA damage responses in B cells.

Rachel Johnston, Brendan Mathias, Stephanie J Crowley, Haley A Schmidt, Lynn S White, Nima Mosammaparast, Abby M Green, Jeffrey J Bednarski

Open access · greenAbstract read
In one paragraph

Article in EMBO reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.5field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
  3. When DNA-damage responses meet innate and adaptive immunity.Cellular and molecular life sciences : CMLS · 2024
    Review
  4. Article
  5. Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Rachel JohnstonDepartment of Pediatrics, Washington University School of Medicine, St. Louis, MO, USA.
Brendan MathiasDepartment of Pediatrics, Washington University School of Medicine, St. Louis, MO, USA.
Stephanie J CrowleyDepartment of Pediatrics, Washington University School of Medicine, St. Louis, MO, USA.ORCID 0000-0002-6665-0108
Haley A SchmidtDepartment of Pediatrics, Washington University School of Medicine, St. Louis, MO, USA.
Lynn S WhiteDepartment of Pediatrics, Washington University School of Medicine, St. Louis, MO, USA.
Nima MosammaparastDepartment of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO, USA.ORCID 0000-0001-5453-5914
Abby M GreenDepartment of Pediatrics, Washington University School of Medicine, St. Louis, MO, USA.ORCID 0000-0002-6436-2217
Jeffrey J BednarskiDepartment of Pediatrics, Washington University School of Medicine, St. Louis, MO, USA.ORCID 0000-0001-6902-0876
Washington University in St. Louis · US

Funding

Transcription-Coupled & Replication-Associated Excision RepairP01CA092584 · NCI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI WALTER J. CHAZIN · 2001 to 2026
$89.6M
TRAINING PROGRAM IN IMMUNOLOGY AND IMMUNOGENETICST32AI007163 · NIAID · WASHINGTON UNIVERSITY · PI Kenneth M Murphy, Kodi S Ravichandran · 1985 to 2026
$14.8M
MECHANISM AND REGULATION OF THE DNA ALKYLATION DAMAGE RESPONSER01CA193318 · NCI · WASHINGTON UNIVERSITY · PI MOSAMMAPARAST, NIMA · 2015 to 2024
$3.6M
Dignity Therapy RCT led by Nurses or Chaplains for Elderly Cancer OutpatientsR01CA200867 · NCI · UNIVERSITY OF FLORIDA · PI EMANUEL, LINDA LEAH, FITCHETT, GEORGE · 2016 to 2020
$3.2M
RAG-mediated DNA Damage Responses in Immune Development and FunctionR01AI173077 · NIAID · WASHINGTON UNIVERSITY · PI BEDNARSKI, JEFFREY J · 2022 to 2025
$2.6M
A SIGNALING PATHWAY SPECIFIC FOR ALKYLATION DAMAGER01CA227001 · NCI · WASHINGTON UNIVERSITY · PI MOSAMMAPARAST, NIMA · 2018 to 2022
$1.8M
INTEGRATION OF DNA DAMAGE RESPONSES WITH IMMUNE DEVELOPMENT AND FUNCTIONK08AI102946 · NIAID · WASHINGTON UNIVERSITY · PI BEDNARSKI, JEFFREY J · 2012 to 2016
$634k
Role of DNA Damage Responses in Immune Development and FunctionR56AI153234 · NIAID · WASHINGTON UNIVERSITY · PI BEDNARSKI, JEFFREY J · 2020 to 2020
$315k
NCI NIH HHS P01 CA092584NCI NIH HHS R01 CA193318NCI NIH HHS R01 CA200867NCI NIH HHS R01 CA227001NIAID NIH HHS K08 AI102946NIAID NIH HHS R01 AI173077NIAID NIH HHS R56 AI153234NIAID NIH HHS T32 AI007163
6 · The paper itself

Abstract

Developing B cells generate DNA double-stranded breaks (DSBs) to assemble immunoglobulin receptor (Ig) genes necessary for the expression of a mature B cell receptor. These physiologic DSBs are made by the RAG endonuclease, which is comprised of the RAG1 and RAG2 proteins. In pre-B cells, RAG-mediated DSBs activate the ATM kinase to coordinate canonical and non-canonical DNA damage responses (DDR) that trigger DSB repair and B cell developmental signals, respectively. Whether this broad cellular response is distinctive to RAG DSBs is poorly understood. To delineate the factors that direct DDR signaling in B cells, we express a tetracycline-inducible Cas9 nuclease in Rag1-deficient pre-B cells. Both RAG- and Cas9-mediated DSBs at Ig genes activate canonical DDR. In contrast, RAG DSBs, but not Cas9 DSBs, induce the non-canonical DDR-dependent developmental program. This unique response to RAG DSBs is, in part, regulated by non-core regions of RAG1. Thus, B cells trigger distinct cellular responses to RAG DSBs through unique properties of the RAG endonuclease that promotes activation of B cell developmental programs.

Indexed as

DNA Breaks, Double-StrandedHomeodomain ProteinsB-LymphocytesDNA DamagePrecursor Cells, B-LymphoidSignal TransductionHomeodomain ProteinsB cell developmentCas9DNA breaksDNA damage responseRAG

Identifiers

PMID36382770
PMCPMC9827558
OpenAlexW4309154351

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.