Evidence map›Paper›PMID 36381255›Full record

ArticleNeurology. Genetics2022

Cognitive Impairment in a Complex Family With AAGGG and ACAGG Repeat Expansions in RFC1 Detected by ExpansionHunter Denovo.

Kazuki Watanabe, Mitsuko Nakashima, Rie Wakatsuki, Tomoyasu Bunai, Yasuomi Ouchi, Tomohiko Nakamura, Hiroaki Miyajima, Hirotomo Saitsu

Open access · goldAbstract read
In one paragraph

Article in Neurology. Genetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.1field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 12 citations in OpenAlex.

  1. Review
  2. Article
  3. Pseudodominance in RFC1-Spectrum Disorder.Cerebellum (London, England) · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Kazuki WatanabeDepartment of Biochemistry (K.W., M.N., H.S.), Department of Neurology (K.W., R.W., T.B., T.N., H.M.), and Department of Biofunctional Imaging (T.B., Y.O.), Hamamatsu University School of Medicine, Hamamatsu, Japan.ORCID https://orcid.org/0000-0002-3912-273X
Mitsuko NakashimaDepartment of Biochemistry (K.W., M.N., H.S.), Department of Neurology (K.W., R.W., T.B., T.N., H.M.), and Department of Biofunctional Imaging (T.B., Y.O.), Hamamatsu University School of Medicine, Hamamatsu, Japan.ORCID https://orcid.org/0000-0001-7941-1774
Rie WakatsukiDepartment of Biochemistry (K.W., M.N., H.S.), Department of Neurology (K.W., R.W., T.B., T.N., H.M.), and Department of Biofunctional Imaging (T.B., Y.O.), Hamamatsu University School of Medicine, Hamamatsu, Japan.
Tomoyasu BunaiDepartment of Biochemistry (K.W., M.N., H.S.), Department of Neurology (K.W., R.W., T.B., T.N., H.M.), and Department of Biofunctional Imaging (T.B., Y.O.), Hamamatsu University School of Medicine, Hamamatsu, Japan.
Yasuomi OuchiDepartment of Biochemistry (K.W., M.N., H.S.), Department of Neurology (K.W., R.W., T.B., T.N., H.M.), and Department of Biofunctional Imaging (T.B., Y.O.), Hamamatsu University School of Medicine, Hamamatsu, Japan.
Tomohiko NakamuraDepartment of Biochemistry (K.W., M.N., H.S.), Department of Neurology (K.W., R.W., T.B., T.N., H.M.), and Department of Biofunctional Imaging (T.B., Y.O.), Hamamatsu University School of Medicine, Hamamatsu, Japan.
Hiroaki MiyajimaDepartment of Biochemistry (K.W., M.N., H.S.), Department of Neurology (K.W., R.W., T.B., T.N., H.M.), and Department of Biofunctional Imaging (T.B., Y.O.), Hamamatsu University School of Medicine, Hamamatsu, Japan.
Hirotomo SaitsuDepartment of Biochemistry (K.W., M.N., H.S.), Department of Neurology (K.W., R.W., T.B., T.N., H.M.), and Department of Biofunctional Imaging (T.B., Y.O.), Hamamatsu University School of Medicine, Hamamatsu, Japan.ORCID https://orcid.org/0000-0003-0723-0960
Hamamatsu University School of Medicine · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background and Objectives: We investigated the genetic basis and brain metabolism and blood flow of a Japanese family with spinocerebellar degeneration (SCD), with multiple affected members for 3 generations. Methods: After excluding DNA repeat expansion (RE) of common SCD genes by fragment analysis, we performed whole-exome sequencing (WES) and whole-genome sequencing (WGS). Homozygosity mapping was performed using these data. REs were investigated with WGS data using ExpansionHunter Denovo and Expansion Hunter. Results: WES and WGS were unable to identify likely pathogenic variants, and homozygosity mapping failed to narrow down the locus. However, ExpansionHunter Denovo detected REs in intron 2 of the Discussion: Our report shows the usefulness of WGS and RE detection tools for SCD of unknown cause. The studied family with

Identifiers

PMID36381255
PMCPMC9641967
OpenAlexW4281387908

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.