Evidence map›Paper›PMID 36379930›Full record

ArticleNature communications2022

Histone chaperone ASF1 mediates H3.3-H4 deposition in Arabidopsis.

Zhenhui Zhong, Yafei Wang, Ming Wang, Fan Yang, Quentin Angelo Thomas, Yan Xue, Yaxin Zhang, Wanlu Liu, Yasaman Jami-Alahmadi, Linhao Xu and 5 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 33 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Features of DNA methylome in Capsicum spp.Epigenetics & chromatin · 2025
    Article
  10. Physiology and molecular biology of plants : an international journal of functional plant biology · 2025
    Article
  11. Epigenetics in the modern era of crop improvements.Science China. Life sciences · 2025
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. PIF transcription factors-versatile plant epigenome landscapers.Frontiers in epigenetics and epigenomics · 2024
    Review
  18. Review
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 8 institutions in 4 countries.

Zhenhui Zhong *Department of Molecular, Cell and Developmental Biology, University of California, Los Angeles, CA, 90095, USA.ORCID 0000-0002-8438-0375
Yafei Wang *State Key Laboratory of Crop Stress Biology for Arid Areas, College of Life Sciences and Institute of Future Agriculture, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Ming Wang *Department of Molecular, Cell and Developmental Biology, University of California, Los Angeles, CA, 90095, USA.
Fan YangState Key Laboratory of Crop Stress Biology for Arid Areas, College of Life Sciences and Institute of Future Agriculture, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Quentin Angelo ThomasCopenhagen Plant Science Centre, Department of Plant and Environmental Sciences, University of Copenhagen, Frederiksberg, Denmark.ORCID 0000-0002-3522-5125
Yan XueDepartment of Molecular, Cell and Developmental Biology, University of California, Los Angeles, CA, 90095, USA.ORCID 0000-0003-0871-8853
Yaxin ZhangHaixia Institute of Science and Technology, Fujian Agriculture and Forestry University, Fuzhou, 350002, Fujian, China.ORCID 0000-0002-3550-3164
Wanlu LiuZhejiang University-University of Edinburgh Institute (ZJU-UoE Institute), Zhejiang University School of Medicine, International Campus, Zhejiang University, 718 East Haizhou Road, Haining, 314400, Zhejiang, China.ORCID 0000-0001-5963-2908
Yasaman Jami-AlahmadiDepartment of Biological Chemistry, University of California, Los Angeles, CA, 90095, USA.
Linhao XuLeibniz Institute of Plant Genetics and Crop Plant Research (IPK), OT Gatersleben, Stadt Seeland, 06466, Germany.ORCID 0000-0001-9108-8631
Suhua FengDepartment of Molecular, Cell and Developmental Biology, University of California, Los Angeles, CA, 90095, USA.
Sebastian MarquardtCopenhagen Plant Science Centre, Department of Plant and Environmental Sciences, University of Copenhagen, Frederiksberg, Denmark.ORCID 0000-0003-1709-2717
James A WohlschlegelDepartment of Biological Chemistry, University of California, Los Angeles, CA, 90095, USA.
Israel AusinState Key Laboratory of Crop Stress Biology for Arid Areas, College of Life Sciences and Institute of Future Agriculture, Northwest A&F University, Yangling, 712100, Shaanxi, China. israel.ausin@gmail.com.ORCID 0000-0002-3707-1780
Steven E JacobsenDepartment of Molecular, Cell and Developmental Biology, University of California, Los Angeles, CA, 90095, USA. jacobsen@ucla.edu.ORCID 0000-0001-9483-138X
University of California, Los Angeles · USNorthwest A&F University · CNUniversity of Copenhagen · DKFujian Agriculture and Forestry University · CNHoward Hughes Medical Institute · USLeibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK) · DENorth West Agriculture and Forestry University · CNZhejiang University-University of Edinburgh Institute · CN

Funding

Epigenetic gene regulation in ArabidopsisR35GM130272 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI JACOBSEN, STEVEN E · 2019 to 2023
$1.6M
NIGMS NIH HHS R35 GM130272
6 · The paper itself

Abstract

Histone chaperones and chromatin remodelers control nucleosome dynamics, which are essential for transcription, replication, and DNA repair. The histone chaperone Anti-Silencing Factor 1 (ASF1) plays a central role in facilitating CAF-1-mediated replication-dependent H3.1 deposition and HIRA-mediated replication-independent H3.3 deposition in yeast and metazoans. Whether ASF1 function is evolutionarily conserved in plants is unknown. Here, we show that Arabidopsis ASF1 proteins display a preference for the HIRA complex. Simultaneous mutation of both Arabidopsis ASF1 genes caused a decrease in chromatin density and ectopic H3.1 occupancy at loci typically enriched with H3.3. Genetic, transcriptomic, and proteomic data indicate that ASF1 proteins strongly prefers the HIRA complex over CAF-1. asf1 mutants also displayed an increase in spurious Pol II transcriptional initiation and showed defects in the maintenance of gene body CG DNA methylation and in the distribution of histone modifications. Furthermore, ectopic targeting of ASF1 caused excessive histone deposition, less accessible chromatin, and gene silencing. These findings reveal the importance of ASF1-mediated histone deposition for proper epigenetic regulation of the genome.

Indexed as

ArabidopsisArabidopsis ProteinsCell Cycle ProteinsChromatinChromatin Assembly Factor-1Epigenesis, GeneticHistone ChaperonesHistonesMolecular ChaperonesProteomicsArabidopsis ProteinsCell Cycle ProteinsChromatinChromatin Assembly Factor-1Histone ChaperonesHistonesMolecular Chaperones

Identifiers

PMID36379930
PMCPMC9666630
OpenAlexW4309436592

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.