Evidence map›Paper›PMID 36378467›Full record

ArticleNeuroinformatics2023

Deconvolution of the Functional Ultrasound Response in the Mouse Visual Pathway Using Block-Term Decomposition.

Aybüke Erol, Chagajeg Soloukey, Bastian Generowicz, Nikki van Dorp, Sebastiaan Koekkoek, Pieter Kruizinga, Borbála Hunyadi

Erratum issuedOpen access · hybridAbstract read
In one paragraph

Article in Neuroinformatics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Aybüke ErolCircuits and Systems (CAS), Department of Microelectronics, Delft University of Technology, Mekelweg 5, Delft, 2628 CD, The Netherlands. a.erol@tudelft.nl.
Chagajeg SoloukeyCenter for Ultrasound and Brain imaging at Erasmus MC (CUBE), Department of Neuroscience, Erasmus Medical Center, Doctor Molewaterplein 40, Rotterdam, 3015 GD, The Netherlands.
Bastian GenerowiczCenter for Ultrasound and Brain imaging at Erasmus MC (CUBE), Department of Neuroscience, Erasmus Medical Center, Doctor Molewaterplein 40, Rotterdam, 3015 GD, The Netherlands.
Nikki van DorpCenter for Ultrasound and Brain imaging at Erasmus MC (CUBE), Department of Neuroscience, Erasmus Medical Center, Doctor Molewaterplein 40, Rotterdam, 3015 GD, The Netherlands.
Sebastiaan KoekkoekCenter for Ultrasound and Brain imaging at Erasmus MC (CUBE), Department of Neuroscience, Erasmus Medical Center, Doctor Molewaterplein 40, Rotterdam, 3015 GD, The Netherlands.
Pieter KruizingaCenter for Ultrasound and Brain imaging at Erasmus MC (CUBE), Department of Neuroscience, Erasmus Medical Center, Doctor Molewaterplein 40, Rotterdam, 3015 GD, The Netherlands.
Borbála HunyadiCircuits and Systems (CAS), Department of Microelectronics, Delft University of Technology, Mekelweg 5, Delft, 2628 CD, The Netherlands.
Erasmus MC · NLDelft University of Technology · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Functional ultrasound (fUS) indirectly measures brain activity by detecting changes in cerebral blood volume following neural activation. Conventional approaches model such functional neuroimaging data as the convolution between an impulse response, known as the hemodynamic response function (HRF), and a binarized representation of the input signal based on the stimulus onsets, the so-called experimental paradigm (EP). However, the EP may not characterize the whole complexity of the activity-inducing signals that evoke the hemodynamic changes. Furthermore, the HRF is known to vary across brain areas and stimuli. To achieve an adaptable framework that can capture such dynamics of the brain function, we model the multivariate fUS time-series as convolutive mixtures and apply block-term decomposition on a set of lagged fUS autocorrelation matrices, revealing both the region-specific HRFs and the source signals that induce the hemodynamic responses. We test our approach on two mouse-based fUS experiments. In the first experiment, we present a single type of visual stimulus to the mouse, and deconvolve the fUS signal measured within the mouse brain's lateral geniculate nucleus, superior colliculus and visual cortex. We show that the proposed method is able to recover back the time instants at which the stimulus was displayed, and we validate the estimated region-specific HRFs based on prior studies. In the second experiment, we alter the location of the visual stimulus displayed to the mouse, and aim at differentiating the various stimulus locations over time by identifying them as separate sources.

Indexed as

Visual CortexVisual PathwaysAnimalsBrainBrain MappingHemodynamicsMagnetic Resonance ImagingMiceDeconvolutionFensor decompositionFunctional ultrasoundHemodynamic response functionMouseVisual perception

Identifiers

PMID36378467
PMCPMC10085969
OpenAlexW4309095181

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.