Evidence map›Paper›PMID 36377950›Full record

ArticleMicrobiology spectrum2022

Genomic Insights into the Mobilome and Resistome of Sentinel Microorganisms Originating from Farms of Two Different Swine Production Systems.

Oscar Mencía-Ares, Maria Borowiak, Héctor Argüello, José Francisco Cobo-Díaz, Burkhard Malorny, Avelino Álvarez-Ordóñez, Ana Carvajal, Carlus Deneke

Abstract read
In one paragraph

Article in Microbiology spectrum, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Genomic Surveillance of ESBL-ProducingPathogens (Basel, Switzerland) · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Population structure, resistome, and virulome ofFrontiers in cellular and infection microbiology · 2025
    Article
  8. Insights into the Virulence and Antimicrobial Resistance ofAntibiotics (Basel, Switzerland) · 2024
    Article
  9. Article
  10. Frontiers in antibiotics · 2024
    Article
  11. Genomic dissection ofISME communications · 2024
    Article
  12. Antimicrobial Resistance in CommensalAntibiotics (Basel, Switzerland) · 2023
    Review
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Oscar Mencía-AresDepartment of Animal Health, Veterinary Faculty, Universidad de León, León, Spain.
Maria BorowiakDepartment of Biological Safety, German Federal Institute for Risk Assessment, Berlin, Germany.
Héctor ArgüelloDepartment of Animal Health, Veterinary Faculty, Universidad de León, León, Spain.ORCID 0000-0001-8504-2717
José Francisco Cobo-DíazDepartment of Food Hygiene and Technology, Veterinary Faculty, Universidad de León, León, Spain.
Burkhard MalornyDepartment of Biological Safety, German Federal Institute for Risk Assessment, Berlin, Germany.ORCID 0000-0002-3363-8225
Avelino Álvarez-OrdóñezDepartment of Food Hygiene and Technology, Veterinary Faculty, Universidad de León, León, Spain.
Ana CarvajalDepartment of Animal Health, Veterinary Faculty, Universidad de León, León, Spain.
Carlus DenekeDepartment of Biological Safety, German Federal Institute for Risk Assessment, Berlin, Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Antimicrobial resistance (AMR) is a threat to public health due to long-term antimicrobial use (AMU), which promotes the bacterial acquisition of antimicrobial resistance determinants (ARDs). Within food-producing animals, organic and extensive Iberian swine production is based on sustainable and eco-friendly management systems, providing an excellent opportunity to evaluate how sustained differences in AMU impact the development and spread of AMR. Here, through a whole-genome sequencing approach, we provide an in-depth characterization of the resistome and mobilome and their interaction in 466 sentinel bacteria, namely, Escherichia coli, Enterococcus spp., Campylobacter coli, and Staphylococcus spp., recovered from 37 intensive and organic-extensive pig farms. Both ARDs and mobile genetic elements (MGEs) were primarily taxon-associated, with higher similarities among bacteria which were closely phylogenetically related. E. coli exhibited the most diverse resistome and mobilome, with 85.4% mobilizable ARDs, 50.3% of which were plasmid-associated. Staphylococcus spp. exhibited a broad repertoire of ARDs and MGEs, with 52.3% of its resistome being mobilizable. Although

Indexed as

Anti-Infective AgentsRespiratory Distress SyndromeAnimalsAnti-Bacterial AgentsBacteriaDrug Resistance, BacterialEscherichia coliFarmsGenomicsSwineAnti-Bacterial AgentsAnti-Infective Agentsantimicrobial resistanceCampylobacter coliEnterococcus spp.Escherichia colimobile genetic elementpigsStaphylococcus spp.sustainable farmingwhole-genome sequencing

Identifiers

PMID36377950
PMCPMC9769681

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.