Evidence map›Paper›PMID 36377463›Full record

ArticleGigaScience2022

An in vitro whole-cell electrophysiology dataset of human cortical neurons.

Derek Howard, Homeira Moradi Chameh, Alexandre Guet-McCreight, Huan Allen Hsiao, Maggie Vuong, Young Seok Seo, Prajay Shah, Anukrati Nigam, Yuxiao Chen, Melanie Davie and 3 more

Open access · goldAbstract read
In one paragraph

Article in GigaScience, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
3.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 29 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 2 countries.

Derek HowardKrembil Centre for Neuroinformatics, Centre for Addiction and Mental Health, Toronto, ON, M5T 1R8, Canada.ORCID 0000-0002-6621-9473
Homeira Moradi ChamehKrembil Brain Institute, University Health Network, Toronto, ON, M5T 1M8, Canada.ORCID 0000-0002-8009-147X
Alexandre Guet-McCreightKrembil Centre for Neuroinformatics, Centre for Addiction and Mental Health, Toronto, ON, M5T 1R8, Canada.ORCID 0000-0002-2377-0337
Huan Allen HsiaoKrembil Centre for Neuroinformatics, Centre for Addiction and Mental Health, Toronto, ON, M5T 1R8, Canada.
Maggie VuongKrembil Centre for Neuroinformatics, Centre for Addiction and Mental Health, Toronto, ON, M5T 1R8, Canada.
Young Seok SeoKrembil Brain Institute, University Health Network, Toronto, ON, M5T 1M8, Canada.
Prajay ShahKrembil Brain Institute, University Health Network, Toronto, ON, M5T 1M8, Canada.
Anukrati NigamKrembil Centre for Neuroinformatics, Centre for Addiction and Mental Health, Toronto, ON, M5T 1R8, Canada.
Yuxiao ChenKrembil Centre for Neuroinformatics, Centre for Addiction and Mental Health, Toronto, ON, M5T 1R8, Canada.ORCID 0000-0001-9493-7918
Melanie DavieKrembil Centre for Neuroinformatics, Centre for Addiction and Mental Health, Toronto, ON, M5T 1R8, Canada.ORCID 0000-0001-8183-8064
Etay HayKrembil Centre for Neuroinformatics, Centre for Addiction and Mental Health, Toronto, ON, M5T 1R8, Canada.
Taufik A ValianteKrembil Brain Institute, University Health Network, Toronto, ON, M5T 1M8, Canada.ORCID 0000-0002-3443-3790
Shreejoy J TripathyKrembil Centre for Neuroinformatics, Centre for Addiction and Mental Health, Toronto, ON, M5T 1R8, Canada.ORCID 0000-0002-1007-9061
Centre for Addiction and Mental Health · CAUniversity Health Network · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundWhole-cell patch-clamp electrophysiology is an essential technique for understanding how single neurons translate their diverse inputs into a functional output. The relative inaccessibility of live human cortical neurons for experimental manipulation has made it difficult to determine the unique features of how human cortical neurons differ from their counterparts in other species.

findingsWe present a curated repository of whole-cell patch-clamp recordings from surgically resected human cortical tissue, encompassing 118 neurons from 35 individuals (age range, 21-59 years; 17 male, 18 female). Recorded human cortical neurons derive from layers 2 and 3 (L2&3), deep layer 3 (L3c), or layer 5 (L5) and are annotated with a rich set of subject and experimental metadata. For comparison, we also provide a limited set of comparable recordings from 21-day-old mice (11 cells from 5 mice). All electrophysiological recordings are provided in the Neurodata Without Borders (NWB) format and are available for further analysis via the Distributed Archives for Neurophysiology Data Integration online repository. The associated data conversion code is made publicly available and can help others in converting electrophysiology datasets to the open NWB standard for general reuse.

conclusionThese data can be used for novel analyses of biophysical characteristics of human cortical neurons, including in cross-species or cross-lab comparisons or in building computational models of individual human neurons.

Indexed as

NeuronsAdultAnimalsElectrophysiologyFemaleHumansMaleMiceMiddle AgedPatch-Clamp TechniquesYoung Adult

Identifiers

PMID36377463
PMCPMC9664072
OpenAlexW4309360833

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.