Evidence map›Paper›PMID 36376802›Full record

ArticleBMC bioinformatics2022

A novel bi-directional heterogeneous network selection method for disease and microbial association prediction.

Jian Guan, Zhao Gong Zhang, Yong Liu, Meng Wang

Open access · goldAbstract read
In one paragraph

Article in BMC bioinformatics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.6field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Jian GuanSchool of Computer Science and Technology, Heilongjiang University, Harbin, China.
Zhao Gong ZhangSchool of Computer Science and Technology, Heilongjiang University, Harbin, China. 2013010@hlju.edu.cn.
Yong LiuSchool of Computer Science and Technology, Heilongjiang University, Harbin, China. 2010023@hlju.edu.cn.
Meng WangSchool of Computer Science and Technology, Heilongjiang University, Harbin, China.
Heilongjiang University of Science and Technology · CN

Funding

Foundation of Graduate Innovative Research Project of Heilongjiang University YJSCX2022-089HLJUNatural Science Foundation of China 61972135
6 · The paper itself

Abstract

Microorganisms in the human body have a great impact on human health. Therefore, mastering the potential relationship between microorganisms and diseases is helpful to understand the pathogenesis of diseases and is of great significance to the prevention, diagnosis, and treatment of diseases. In order to predict the potential microbial disease relationship, we propose a new computational model. Firstly, a bi-directional heterogeneous microbial disease network is constructed by integrating multiple similarities, including Gaussian kernel similarity, microbial function similarity, disease semantic similarity, and disease symptom similarity. Secondly, the neighbor information of the network is learned by random walk; Finally, the selection model is used for information aggregation, and the microbial disease node pair is analyzed. Our method is superior to the existing methods in leave-one-out cross-validation and five-fold cross-validation. Moreover, in case studies of different diseases, our method was proven to be effective.

Indexed as

AlgorithmsComputational BiologyHumansSemanticsBi-directional heterogeneous networkcausal selection modelPotential microorganism disease predictionRandom walk

Identifiers

PMID36376802
PMCPMC9664813
OpenAlexW4308963509

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.