Evidence map›Paper›PMID 36376429›Full record

ArticleCommunications biology2022

The protein conformational basis of isoflavone biosynthesis.

Xiaoqiang Wang, Haiyun Pan, Someswar Sagurthi, Vincent Paris, Chunliu Zhuo, Richard A Dixon

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Recent advances in understanding the regulation of plant secondary metabolite biosynthesis by ethylene-mediated pathways.Physiology and molecular biology of plants : an international journal of functional plant biology · 2024
    Review
  7. Systematic Engineering ofJournal of fungi (Basel, Switzerland) · 2024
    Article
  8. Article
  9. Evolution and diversification of carboxylesterase-like [4+2] cyclases in aspidosperma and iboga alkaloid biosynthesis.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Xiaoqiang Wang *BioDiscovery Institute and Department of Biological Sciences, University of North Texas, Denton, TX, 76203-5017, USA. Xiaoqiang.Wang@unt.edu.ORCID 0000-0001-9135-1663
Haiyun Pan *Conagen, Inc., Bedford, MA, 01730, USA.
Someswar SagurthiDepartment of Genetics & Biotechnology, Osmania University, Hyderabad, 500007, India.ORCID 0000-0003-1939-0849
Vincent ParisBioDiscovery Institute and Department of Biological Sciences, University of North Texas, Denton, TX, 76203-5017, USA.ORCID 0000-0002-0361-6965
Chunliu ZhuoBioDiscovery Institute and Department of Biological Sciences, University of North Texas, Denton, TX, 76203-5017, USA.ORCID 0000-0003-2307-6270
Richard A DixonBioDiscovery Institute and Department of Biological Sciences, University of North Texas, Denton, TX, 76203-5017, USA.ORCID 0000-0001-8393-9408
University of North Texas · USConagen (United States) · USOsmania University · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Isoflavonoids play important roles in plant defense and also exhibit a range of mammalian health-promoting activities. Their biosynthesis is initiated by two enzymes with unusual catalytic activities; 2-hydroxyisoflavanone synthase (2-HIS), a membrane-bound cytochrome P450 catalyzing a coupled aryl-ring migration and hydroxylation, and 2-hydroxyisoflavanone dehydratase (2-HID), a member of a large carboxylesterase family that paradoxically catalyzes dehydration of 2-hydroxyisoflavanones to isoflavone. Here we report the crystal structures of 2-HIS from Medicago truncatula and 2-HID from Pueraria lobata. The 2-HIS structure reveals a unique cytochrome P450 conformation and heme and substrate binding mode that facilitate the coupled aryl-ring migration and hydroxylation reactions. The 2-HID structure reveals the active site architecture and putative catalytic residues for the dual dehydratase and carboxylesterase activities. Mutagenesis studies revealed key residues involved in substrate binding and specificity. Understanding the structural basis of isoflavone biosynthesis will facilitate the engineering of new bioactive isoflavonoids.

Indexed as

IsoflavonesAnimalsCarboxylic Ester HydrolasesCytochrome P-450 Enzyme SystemHydro-LyasesMammalsProtein ConformationCarboxylic Ester HydrolasesCytochrome P-450 Enzyme SystemHydro-LyasesIsoflavones

Identifiers

PMID36376429
PMCPMC9663428
OpenAlexW4308985014

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.