Evidence map›Paper›PMID 36376326›Full record

ArticleNature communications2022

Gating intermediates reveal inhibitory role of the voltage sensor in a cyclic nucleotide-modulated ion channel.

Xiaolong Gao, Philipp A M Schmidpeter, Vladimir Berka, Ryan J Durham, Chen Fan, Vasanthi Jayaraman, Crina M Nimigean

Abstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
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  9. Single-Molecule FRET Analyses of NMDA Receptors.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  10. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Xiaolong Gao *Department of Anesthesiology, Weill Cornell Medical College, 1300 York Avenue, New York, NY, 10065, USA.
Philipp A M Schmidpeter *Department of Anesthesiology, Weill Cornell Medical College, 1300 York Avenue, New York, NY, 10065, USA.ORCID 0000-0003-2871-9706
Vladimir BerkaDepartment of Biochemistry and Molecular Biology, University of Texas Health Science Center, Houston, TX, USA.
Ryan J DurhamDepartment of Biochemistry and Molecular Biology, University of Texas Health Science Center, Houston, TX, USA.
Chen FanDepartment of Anesthesiology, Weill Cornell Medical College, 1300 York Avenue, New York, NY, 10065, USA.
Vasanthi JayaramanDepartment of Biochemistry and Molecular Biology, University of Texas Health Science Center, Houston, TX, USA.
Crina M NimigeanDepartment of Anesthesiology, Weill Cornell Medical College, 1300 York Avenue, New York, NY, 10065, USA. crn2002@med.cornell.edu.ORCID 0000-0002-6254-4447

Funding

TRD #3: An automated and streamlined pipeline for in-situ molecular microscopyP41GM103310 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI DE MARCO, ALEX, KIEFT, JEFFREY S · 2012 to 2021
$14.7M
Dynamics Of Ligand Gated Ion ChannelsR35GM122528 · NIGMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI Vasanthi Jayaraman · 2017 to 2026
$6.2M
Structural dynamics in cyclic nucleotide-modulated channelsR01GM124451 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI NIMIGEAN, CRINA M · 2017 to 2024
$3.2M
NIGMS NIH HHS P41 GM103310NIGMS NIH HHS R01 GM124451NIGMS NIH HHS R35 GM122528
6 · The paper itself

Abstract

Understanding how ion channels gate is important for elucidating their physiological roles and targeting them in pathophysiological states. Here, we used SthK, a cyclic nucleotide-modulated channel from Spirochaeta thermophila, to define a ligand-gating trajectory that includes multiple on-pathway intermediates. cAMP is a poor partial agonist for SthK and depolarization increases SthK activity. Tuning the energy landscape by gain-of-function mutations in the voltage sensor domain (VSD) allowed us to capture multiple intermediates along the ligand-activation pathway, highlighting the allosteric linkage between VSD, cyclic nucleotide-binding (CNBD) and pore domains. Small, lateral displacements of the VSD S4 segment were necessary to open the intracellular gate, pointing to an inhibitory VSD at rest. We propose that in wild-type SthK, depolarization leads to such VSD displacements resulting in release of inhibition. In summary, we report conformational transitions along the activation pathway that reveal allosteric couplings between key sites integrating to open the intracellular gate.

Indexed as

Cyclic Nucleotide-Gated Cation ChannelsNucleotides, CyclicCyclic AMPIon Channel GatingLigandsCyclic AMPCyclic Nucleotide-Gated Cation ChannelsLigandsNucleotides, Cyclic

Identifiers

PMID36376326
PMCPMC9663499

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.