Evidence map›Paper›PMID 36374585›Full record

ArticleJournal of the Royal Society of Medicine2023

Using national electronic health records for pandemic preparedness: validation of a parsimonious model for predicting excess deaths among those with COVID-19-a data-driven retrospective cohort study.

Mehrdad A Mizani, Ashkan Dashtban, Laura Pasea, Alvina G Lai, Johan Thygesen, Chris Tomlinson, Alex Handy, Jil B Mamza, Tamsin Morris, Sara Khalid and 14 more

Abstract read
In one paragraph

Article in Journal of the Royal Society of Medicine, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. 2023: Another year of technology and Big Data?Journal of the Royal Society of Medicine · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors.

Mehrdad A MizaniInstitute of Health Informatics, University College London, London NW1 2DA, UK.
Ashkan DashtbanInstitute of Health Informatics, University College London, London NW1 2DA, UK.
Laura PaseaInstitute of Health Informatics, University College London, London NW1 2DA, UK.
Alvina G LaiInstitute of Health Informatics, University College London, London NW1 2DA, UK.
Johan ThygesenInstitute of Health Informatics, University College London, London NW1 2DA, UK.
Chris TomlinsonInstitute of Health Informatics, University College London, London NW1 2DA, UK.ORCID 0000-0002-0903-5395
Alex HandyInstitute of Health Informatics, University College London, London NW1 2DA, UK.
Jil B MamzaMedical and Scientific Affairs, BioPharmaceuticals Medical, AstraZeneca, Cambridge, CB2 0AA, UK.
Tamsin MorrisMedical and Scientific Affairs, BioPharmaceuticals Medical, AstraZeneca, Cambridge, CB2 0AA, UK.
Sara KhalidNuffield Department of Orthopaedics, Rheumatology and Musculoskeletal Sciences, University of Oxford, Oxford, OX3 7HE, UK.
Francesco ZaccardiLeicester Diabetes Centre, University of Leicester, Leicester, LE5 4PW, UK.
Mary Joan MacleodSchool of Medicine, Medical Sciences and Nutrition, University of Aberdeen, Aberdeen, AB24 3FX, UK.
Fatemeh TorabiFaculty of Medicine, Health and Life Science, Swansea University, Swansea, SA2 8QA, UK.
Dexter CanoyNuffield Department of Women's and Reproductive Health, University of Oxford, Oxford, OX3 9DU, UK.
Ashley AkbariFaculty of Medicine, Health and Life Science, Swansea University, Swansea, SA2 8QA, UK.ORCID 0000-0003-0814-0801
Colin BerryInstitute of Cardiovascular and Medical Sciences, University of Glasgow, Glasgow, G12 8TA, UK.
Thomas BoltonBHF Data Science Centre, Health Data Research UK, London, NW1 2BE, UK.
John NolanBHF Data Science Centre, Health Data Research UK, London, NW1 2BE, UK.
Kamlesh KhuntiLeicester Diabetes Centre, University of Leicester, Leicester, LE5 4PW, UK.
Spiros DenaxasInstitute of Health Informatics, University College London, London NW1 2DA, UK.
Harry HemingwayInstitute of Health Informatics, University College London, London NW1 2DA, UK.
Cathie SudlowBHF Data Science Centre, Health Data Research UK, London, NW1 2BE, UK.
Amitava BanerjeeInstitute of Health Informatics, University College London, London NW1 2DA, UK.ORCID 0000-0001-8741-3411
CVD-COVID-UK Consortium

Funding

Medical Research Council MC_PC_20030Medical Research Council MC_PC_20051Medical Research Council MC_PC_20059
6 · The paper itself

Abstract

objectivesTo use national, pre- and post-pandemic electronic health records (EHR) to develop and validate a scenario-based model incorporating baseline mortality risk, infection rate (IR) and relative risk (RR) of death for prediction of excess deaths.

designAn EHR-based, retrospective cohort study.

settingLinked EHR in Clinical Practice Research Datalink (CPRD); and linked EHR and COVID-19 data in England provided in NHS Digital Trusted Research Environment (TRE).

participantsIn the development (CPRD) and validation (TRE) cohorts, we included 3.8 million and 35.1 million individuals aged ≥30 years, respectively.

main outcome measuresOne-year all-cause excess deaths related to COVID-19 from March 2020 to March 2021.

resultsFrom 1 March 2020 to 1 March 2021, there were 127,020 observed excess deaths. Observed RR was 4.34% (95% CI, 4.31-4.38) and IR was 6.27% (95% CI, 6.26-6.28). In the validation cohort, predicted one-year excess deaths were 100,338 compared with the observed 127,020 deaths with a ratio of predicted to observed excess deaths of 0.79.

conclusionsWe show that a simple, parsimonious model incorporating baseline mortality risk, one-year IR and RR of the pandemic can be used for scenario-based prediction of excess deaths in the early stages of a pandemic. Our analyses show that EHR could inform pandemic planning and surveillance, despite limited use in emergency preparedness to date. Although infection dynamics are important in the prediction of mortality, future models should take greater account of underlying conditions.

Indexed as

COVID-19Electronic Health RecordsEnglandHumansPandemicsRetrospective StudiesClinicalepidemiologyhealth informaticsinfectious diseasespublic health

Identifiers

PMID36374585
PMCPMC9909113

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.