Evidence map›Paper›PMID 36374006›Full record

ArticleChembiochem : a European journal of chemical biology2023

Comparing the Catalytic and Structural Characteristics of a 'Short' Unspecific Peroxygenase (UPO) Expressed in Pichia pastoris and Escherichia coli.

Wendy X Q Robinson, Tamara Mielke, Benjamin Melling, Anibal Cuetos, Alison Parkin, William P Unsworth, Jared Cartwright, Gideon Grogan

Open access · hybridAbstract readComparative Study
In one paragraph

Article in Chembiochem : a European journal of chemical biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 23 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Wendy X Q RobinsonYork Structural Biology Laboratory, Department of Chemistry, University of York, Heslington, York, YO10 5DD, UK.
Tamara MielkeYork Structural Biology Laboratory, Department of Chemistry, University of York, Heslington, York, YO10 5DD, UK.
Benjamin MellingYork Structural Biology Laboratory, Department of Chemistry, University of York, Heslington, York, YO10 5DD, UK.
Anibal CuetosYork Structural Biology Laboratory, Department of Chemistry, University of York, Heslington, York, YO10 5DD, UK.
Alison ParkinYork Structural Biology Laboratory, Department of Chemistry, University of York, Heslington, York, YO10 5DD, UK.
William P UnsworthYork Structural Biology Laboratory, Department of Chemistry, University of York, Heslington, York, YO10 5DD, UK.
Jared CartwrightDepartment of Biology, University of York, Heslington, York, YO10 5DD, UK.
Gideon GroganYork Structural Biology Laboratory, Department of Chemistry, University of York, Heslington, York, YO10 5DD, UK.ORCID 0000-0003-1383-7056
University of York · GB

Funding

BBSRC BB/P005578/1
6 · The paper itself

Abstract

Unspecific peroxygenases (UPOs) have emerged as valuable tools for the oxygenation of non-activated carbon atoms, as they exhibit high turnovers, good stability and depend only on hydrogen peroxide as the external oxidant for activity. However, the isolation of UPOs from their natural fungal sources remains a barrier to wider application. We have cloned the gene encoding an 'artificial' peroxygenase (artUPO), close in sequence to the 'short' UPO from Marasmius rotula (MroUPO), and expressed it in both the yeast Pichia pastoris and E. coli to compare the catalytic and structural characteristics of the enzymes produced in each system. Catalytic efficiency for the UPO substrate 5-nitro-1,3-benzodioxole (NBD) was largely the same for both enzymes, and the structures also revealed few differences apart from the expected glycosylation of the yeast enzyme. However, the glycosylated enzyme displayed greater stability, as determined by nano differential scanning fluorimetry (nano-DSF) measurements. Interestingly, while artUPO hydroxylated ethylbenzene derivatives to give the (R)-alcohols, also given by a variant of the 'long' UPO from Agrocybe aegerita (AaeUPO), it gave the opposite (S)-series of sulfoxide products from a range of sulfide substrates, broadening the scope for application of the enzymes. The structures of artUPO reveal substantial differences to that of AaeUPO, and provide a platform for investigating the distinctive activity of this and related'short' UPOs.

Indexed as

Escherichia coliSaccharomyces cerevisiaeMixed Function OxygenasesPichiaSaccharomycetalesMixed Function OxygenasesperoxygenasebiocatalysishydroxylationoxygenasesPichia pastorisunspecific peroxygenases

Identifiers

PMID36374006
PMCPMC10098773
OpenAlexW4308954777

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.