Evidence map›Paper›PMID 36373674›Full record

ArticleeLife2022

The Nse5/6-like SIMC1-SLF2 complex localizes SMC5/6 to viral replication centers.

Martina Oravcová, Minghua Nie, Nicola Zilio, Shintaro Maeda, Yasaman Jami-Alahmadi, Eros Lazzerini-Denchi, James A Wohlschlegel, Helle D Ulrich, Takanori Otomo, Michael N Boddy

Open access · goldAbstract read
In one paragraph

Article in eLife, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
5.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 27 citations in OpenAlex.

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  20. Molecular basis for Nse5-6 mediated regulation of Smc5/6 functions.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Martina OravcováDepartment of Molecular Medicine, The Scripps Research Institute, La Jolla, United States.ORCID 0000-0001-6063-2227
Minghua NieDepartment of Molecular Medicine, The Scripps Research Institute, La Jolla, United States.
Nicola ZilioInstitute of Molecular Biology, Mainz, Germany.
Shintaro MaedaDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, United States.
Yasaman Jami-AlahmadiDepartment of Biological Chemistry, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, United States.
Eros Lazzerini-DenchiLaboratory of Genome Integrity, National Cancer Institute, Bethesda, United States.
James A WohlschlegelDepartment of Biological Chemistry, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, United States.
Helle D UlrichInstitute of Molecular Biology, Mainz, Germany.
Takanori OtomoDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, United States.ORCID 0000-0003-3589-238X
Michael N BoddyDepartment of Molecular Medicine, The Scripps Research Institute, La Jolla, United States.ORCID 0000-0001-7618-4449
Scripps Research Institute · USUniversity of California, Los Angeles · USCancer Institute (WIA) · IN

Funding

Structural Studies of the Autophagic Ubiquitin-Like ProteinsR01GM092740 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI OTOMO, TAKANORI · 2011 to 2023
$5.9M
Defining Genome Stability Mechanisms and their Regulation by SUMO and UbiquitinR35GM136273 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI MICHAEL N BODDY · 2020 to 2026
$4.3M
COMPUTING AND DATA STORAGE CLUSTER FOR ELECTRON MICROSCOPYS10OD021634 · OD · SCRIPPS RESEARCH INSTITUTE, THE · PI LANDER, GABRIEL C · 2016 to 2016
$531k
NIGMS NIH HHS R01 GM092740NIGMS NIH HHS R35 GM136273NIH HHS S10 OD021634
6 · The paper itself

Abstract

The human SMC5/6 complex is a conserved guardian of genome stability and an emerging component of antiviral responses. These disparate functions likely require distinct mechanisms of SMC5/6 regulation. In yeast, Smc5/6 is regulated by its Nse5/6 subunits, but such regulatory subunits for human SMC5/6 are poorly defined. Here, we identify a novel SMC5/6 subunit called SIMC1 that contains SUMO interacting motifs (SIMs) and an Nse5-like domain. We isolated SIMC1 from the proteomic environment of SMC5/6 within polyomavirus large T antigen (LT)-induced subnuclear compartments. SIMC1 uses its SIMs and Nse5-like domain to localize SMC5/6 to polyomavirus replication centers (PyVRCs) at SUMO-rich PML nuclear bodies. SIMC1's Nse5-like domain binds to the putative Nse6 orthologue SLF2 to form an anti-parallel helical dimer resembling the yeast Nse5/6 structure. SIMC1-SLF2 structure-based mutagenesis defines a conserved surface region containing the N-terminus of SIMC1's helical domain that regulates SMC5/6 localization to PyVRCs. Furthermore, SLF1, which recruits SMC5/6 to DNA lesions via its BRCT and ARD motifs, binds SLF2 analogously to SIMC1 and forms a separate Nse5/6-like complex. Thus, two Nse5/6-like complexes with distinct recruitment domains control human SMC5/6 localization.

Indexed as

Cell Cycle ProteinsChromosomal Proteins, Non-HistoneHumansProteomicsViral Replication CompartmentsCell Cycle ProteinsChromosomal Proteins, Non-HistoneSMC5 protein, humanC5orf25cell biologyhumanmolecular biophysicsNse5nsmce5polyomavirusSIMC1SMC5/6structural biology

Identifiers

PMID36373674
PMCPMC9708086
OpenAlexW4308952200

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.