Evidence map›Paper›PMID 36371937›Full record

ArticleJournal of infection and public health2022

Validation of RT-qPCR test for SARS-CoV-2 in saliva specimens.

Luis Miguel Sosa Ávila, Martha Lucía Díaz Galvis, Mayra Alejandra Jaimes Campos, Anyela Lozano-Parra, Laura Andrea Rodríguez Villamizar, Myriam Oróstegui Arenas, Ruth Aralí Martínez-Vega, Lina María Vera Cala, Leonelo E Bautista

Open access · goldAbstract read
In one paragraph

Article in Journal of infection and public health, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Review
  2. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Luis Miguel Sosa ÁvilaUniversidad Industrial de Santander, Cra. 32 # 29-31, Bucaramanga, Colombia. Electronic address: lmsosavi@uis.edu.co.
Martha Lucía Díaz GalvisUniversidad Industrial de Santander, Cra. 32 # 29-31, Bucaramanga, Colombia. Electronic address: mldiazga@correo.uis.edu.co.
Mayra Alejandra Jaimes CamposUniversidad Industrial de Santander, Cra. 32 # 29-31, Bucaramanga, Colombia. Electronic address: maaljaca@correo.uis.edu.co.
Anyela Lozano-ParraUniversidad Industrial de Santander, Cra. 32 # 29-31, Bucaramanga, Colombia. Electronic address: anyela.lozano@redaedes.org.
Laura Andrea Rodríguez VillamizarUniversidad Industrial de Santander, Cra. 32 # 29-31, Bucaramanga, Colombia. Electronic address: laurovi@uis.edu.co.
Myriam Oróstegui ArenasUniversidad Industrial de Santander, Cra. 32 # 29-31, Bucaramanga, Colombia. Electronic address: ciepi_uis@hotmail.com.
Ruth Aralí Martínez-VegaUniversidad de Santander, Calle 70 No. 55-210, Bucaramanga, Colombia. Electronic address: ruth.martinez@udes.edu.co.
Lina María Vera CalaUniversidad Industrial de Santander, Cra. 32 # 29-31, Bucaramanga, Colombia. Electronic address: limavera@uis.edu.co.
Leonelo E BautistaUniversity of Wisconsin-Madison, 610 Walnut Street, WARF 703, Madison, United States. Electronic address: lebautista@wisc.edu.
Industrial University of Santander · COWisconsin Alumni Research Foundation · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundSaliva samples may be an easier, faster, safer, and cost-saving alternative to NPS samples, and can be self-collected by the patient. Whether SARS-CoV-2 RT-qPCR in saliva is more accurate than in nasopharyngeal swaps (NPS) is uncertain. We evaluated the accuracy of the RT-qPCR in both types of samples, assuming both approaches were imperfect.

methodsWe assessed the limit of detection (LoD) of RT-qPCR in each type of sample. We collected paired NPS and saliva samples and tested them using the Berlin Protocol to detect SARS-CoV-2 envelope protein (E). We used a Bayesian latent class analysis (BLCA) to estimate the sensitivity and specificity of each test, while accounting for their conditional dependence.

resultsThe LoD were 10 copies/mL in saliva and 100 copies/mL in NPS. Paired samples of saliva and NPS were collected in 412 participants. Out of 68 infected cases, 14 were positive only in saliva. RT-qPCR sensitivity ranged from 82.7 % (95 % CrI: 54.8, 94.8) in NPS to 84.5 % (50.9, 96.5) in saliva. Corresponding specificities were 99.1 % (95 % CrI: 95.3, 99.8) and 98.4 %(95 % CrI: 92.8, 99.7).

conclusionsSARS-CoV-2 RT-qPCR test in saliva specimens has a similar or better accuracy than RT-qPCR test in NPS. Saliva specimens may be ideal for surveillance in general population, particularly in children, and in healthcare or other personnel in need of serial testing.

Indexed as

COVID-19SARS-CoV-2Bayes TheoremChildClinical Laboratory TechniquesCOVID-19 TestingHumansNasopharynxSalivaSensitivity and SpecificityBayes TheoremColombiaCOVID-19 testingLatent class analysisPolymerase chain reactionSalivaSARS-CoV-2Sensitivity and specificity

Identifiers

PMID36371937
PMCPMC9628233
OpenAlexW4308152128

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.