Evidence map›Paper›PMID 36371792›Full record

ArticleClinical genetics2023

Putative founder effect of Arg338* AP4M1 (SPG50) variant causing severe intellectual disability, epilepsy and spastic paraplegia: Report of three families.

Aurélie Becker, Charlotte Felici, Laëtitia Lambert, Anne de Saint Martin, Marie-Thérèse Abi-Warde, Elise Schaefer, Christian Zix, Mina Zamani, Saeid Sadeghian, Jawaher Zeighami and 16 more

Open access · hybridAbstract read
In one paragraph

Article in Clinical genetics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

  1. A NovelIranian journal of medical sciences · 2026
    Article
  2. Article
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  4. Strabismus in Genetic Syndromes: A Review.Clinical & experimental ophthalmology · 2025
    Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 8 institutions in 5 countries.

Aurélie BeckerCHRU de Nancy, Laboratoire de Génétique, Inserm U1256, Université de Lorraine, Nancy, France.
Charlotte FeliciCHRU de Nancy, Laboratoire de Génétique, Inserm U1256, Université de Lorraine, Nancy, France.
Laëtitia LambertCHRU de Nancy, Pôle Enfants, Service de Génétique Clinique, Nancy, France.
Anne de Saint MartinHôpital Hautepierre, Centre de référence des épilepsies rares, Strasbourg, France.
Marie-Thérèse Abi-WardeHôpital Hautepierre, Centre de référence des épilepsies rares, Strasbourg, France.
Elise SchaeferHôpService de Génétique médicale, institut de Génétique médicale d'Alsace, CHU Strasbourg, Strasbourg, France.
Christian ZixHôpital de Forbach, Pédiatrie, France.
Mina ZamaniDepartment of Biology, Faculty of Science, Shahid Chamran University of Ahvaz, Ahvaz, Iran.ORCID 0000-0002-7005-3787
Saeid SadeghianDepartment of Pediatric Neurology, Golestan Medical, Educational, and Research Center, Ahvaz Jundishapur University of Medical Sciences, Ahvaz, Iran.
Jawaher ZeighamiNarges Medical Genetics and Prenatal Diagnosis Laboratory, Ahvaz, Iran.
Tahereh SeifiDepartment of Biology, Faculty of Science, Shahid Chamran University of Ahvaz, Ahvaz, Iran.
Reza AzizimalamiriDepartment of Pediatric Neurology, Golestan Medical, Educational, and Research Center, Ahvaz Jundishapur University of Medical Sciences, Ahvaz, Iran.
Gholamreza ShariatiNarges Medical Genetics and Prenatal Diagnosis Laboratory, Ahvaz, Iran.
Hamid GalehdariDepartment of Biology, Faculty of Science, Shahid Chamran University of Ahvaz, Ahvaz, Iran.
Mareike SeligInstitute of Human Genetics, University Medical Center of the Johannes Gutenberg University, Mainz, Germany.
Can DingInstitute of Human Genetics, University Medical Center of the Johannes Gutenberg University, Mainz, Germany.
Sarah DuerinckxIRIBHM, Université Libre de Bruxelles, Brussels, Belgium.
Isabelle PirsonIRIBHM, Université Libre de Bruxelles, Brussels, Belgium.
Marc AbramowiczIRIBHM, Université Libre de Bruxelles, Brussels, Belgium.
Guillemette ClémentInserm U1256, Université de Lorraine, Nancy, France.
Bruno LeheupCHRU de Nancy, Pôle Enfants, Service de Génétique Clinique, Nancy, France.
Philippe JonveauxCHRU de Nancy, Laboratoire de Génétique, Inserm U1256, Université de Lorraine, Nancy, France.
Geneviève LefortCHRU de Nancy, Laboratoire de Génétique, Inserm U1256, Université de Lorraine, Nancy, France.
Myriam BronnerCHRU de Nancy, Laboratoire de Génétique, Inserm U1256, Université de Lorraine, Nancy, France.
Mathilde RenaudCHRU de Nancy, Pôle Enfants, Service de Génétique Clinique, Nancy, France.
Céline BonnetCHRU de Nancy, Laboratoire de Génétique, Inserm U1256, Université de Lorraine, Nancy, France.ORCID 0000-0002-6799-0438
Inserm · FRAhvaz Jundishapur University of Medical Sciences · IRHôpital d'Hautepierre · FRJohannes Gutenberg University Mainz · DEUniversité Libre de Bruxelles · BEGénétique Médicale & Génomique Fonctionelle · FRShahid Chamran University of Ahvaz · IRUniversity of Geneva · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bi-allelic variants affecting one of the four genes encoding the AP4 subunits are responsible for the "AP4 deficiency syndrome." Core features include hypotonia that progresses to hypertonia and spastic paraplegia, intellectual disability, postnatal microcephaly, epilepsy, and neuroimaging features. Namely, AP4M1 (SPG50) is involved in autosomal recessive spastic paraplegia 50 (MIM#612936). We report on three patients with core features from three unrelated consanguineous families originating from the Middle East. Exome sequencing identified the same homozygous nonsense variant: NM_004722.4(AP4M1):c.1012C>T p.Arg338* (rs146262009). So far, four patients from three other families carrying this homozygous variant have been reported worldwide. We describe their phenotype and compare it to the phenotype of patients with other variants in AP4M1. We construct a shared single-nucleotide polymorphism (SNP) haplotype around AP4M1 in four families and suggest a probable founder effect of Arg338* AP4M1 variant with a common ancestor most likely of Turkish origin.

Indexed as

EpilepsyIntellectual DisabilitySpastic Paraplegia, HereditaryCerebral PalsyFounder EffectHumansMutationParaplegiaPedigreePhenotypeAP4M1founder effectspastic paraplegiaSPG50

Identifiers

PMID36371792
PMCPMC10108251
OpenAlexW4308891937

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.