Evidence map›Paper›PMID 36371566›Full record

ArticleScientific reports2022

SARS-CoV-2 detection by targeting four loci of viral genome using graphene oxide and gold nanoparticle DNA biosensor.

Arman Amani Babadi, Shahrooz Rahmati, Rafieh Fakhlaei, Reza Heidari, Saeid Baradaran, Mostafa Akbariqomi, Shuang Wang, Gholamreza Tavoosidana, William Doherty, Kostya Ostrikov

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.1field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 7 institutions in 4 countries.

Arman Amani Babadi *School of Energy and Power Engineering, Jiangsu University, Zhenjiang, 212013, Jiangsu, China.
Shahrooz Rahmati *School of Chemistry and Physics, Queensland University of Technology (QUT), Brisbane, 4000, Australia. shahrooz.rahmati@hdr.qut.edu.au.
Rafieh Fakhlaei *Food Safety and Food Integrity (FOSFI), Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia, 43400, Serdang, Selangor, Malaysia.
Reza Heidari *Research Center for Cancer Screening and Epidemiology, AJA University of Medical Sciences, Tehran, 14117-18541, Iran.
Saeid BaradaranNew Technologies Research Center, Amirkabir University of Technology, Tehran, 15916-34311, Iran.
Mostafa AkbariqomiApplied Microbiology Research Center, Systems Biology and Poisonings Institute, Baqiyatallah University of Medical Sciences, Tehran, 14359-16471, Iran.
Shuang WangSchool of Energy and Power Engineering, Jiangsu University, Zhenjiang, 212013, Jiangsu, China. Alexjuven@ujs.edu.cn.
Gholamreza TavoosidanaDepartment of Molecular Medicine, School of Advanced Technologies in Medicine, Tehran University of Medical Sciences, Tehran, 55469-14177, Iran. g-Tavoosi@tums.ac.ir.
William DohertyCentre for Agriculture and the Bioeconomy, Queensland University of Technology (QUT), Brisbane, 4000, Australia.
Kostya OstrikovSchool of Chemistry and Physics, Queensland University of Technology (QUT), Brisbane, 4000, Australia.
Queensland University of Technology · AUTehran University of Medical Sciences · IRAja University of Medical Sciences · IRAmirkabir University of Technology · IRBaqiyatallah University of Medical Sciences · IRJiangsu University · CNUniversiti Putra Malaysia · MY

Funding

Iran Nanotechnology Innovation Council 99/11/79/2744
6 · The paper itself

Abstract

The current COVID-19 pandemic outbreak poses a serious threat to public health, demonstrating the critical need for the development of effective and reproducible detection tests. Since the RT-qPCR primers are highly specific and can only be designed based on the known sequence, mutation sensitivity is its limitation. Moreover, the mutations in the severe acute respiratory syndrome β-coronavirus (SARS-CoV-2) genome led to new highly transmissible variants such as Delta and Omicron variants. In the case of mutation, RT-qPCR primers cannot recognize and attach to the target sequence. This research presents an accurate dual-platform DNA biosensor based on the colorimetric assay of gold nanoparticles and the surface-enhanced Raman scattering (SERS) technique. It simultaneously targets four different regions of the viral genome for detection of SARS-CoV-2 and its new variants prior to any sequencing. Hence, in the case of mutation in one of the target sequences, the other three probes could detect the SARS-CoV-2 genome. The method is based on visible biosensor color shift and a locally enhanced electromagnetic field and significantly amplified SERS signal due to the proximity of Sulfo-Cyanine 3 (Cy3) and AuNPs intensity peak at 1468 cm

Indexed as

Biosensing TechniquesCOVID-19Metal NanoparticlesDNAGenome, ViralGoldGraphiteHumansPandemicsRNA, ViralSARS-CoV-2DNAGoldgraphene oxideGraphiteRNA, Viral

Identifiers

PMID36371566
PMCPMC9653406
OpenAlexW4309077475

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.