Evidence map›Paper›PMID 36371407›Full record

ArticleScientific data2022

Modeling community standards for metadata as templates makes data FAIR.

Mark A Musen, Martin J O'Connor, Erik Schultes, Marcos Martínez-Romero, Josef Hardi, John Graybeal

Abstract read
In one paragraph

Article in Scientific data, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Mark A MusenStanford Center for Biomedical Informatics Research, Stanford University, Stanford, CA, 94305, USA. musen@stanford.edu.ORCID 0000-0003-3325-793X
Martin J O'ConnorStanford Center for Biomedical Informatics Research, Stanford University, Stanford, CA, 94305, USA.
Erik SchultesGO FAIR Foundation, Rijnsburgerweg 10, 2333 AA, Leiden, Netherlands.ORCID 0000-0001-8888-635X
Marcos Martínez-RomeroStanford Center for Biomedical Informatics Research, Stanford University, Stanford, CA, 94305, USA.
Josef HardiStanford Center for Biomedical Informatics Research, Stanford University, Stanford, CA, 94305, USA.
John GraybealStanford Center for Biomedical Informatics Research, Stanford University, Stanford, CA, 94305, USA.

Funding

Enhancing the RADx Data Hub for Data FAIRnessOT2DB000009 · OD · STANFORD UNIVERSITY · PI MUSEN, MARK A · 2022 to 2023
$44.3M
SenNet Supplement - Consortium BenchmarkingU24CA268108 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Philip D. Blood, JONATHAN C. SILVERSTEIN · 2021 to 2026
$22.1M
Flexible Hybrid Cloud Infrastructure for Seamless Integration and Use of Human Biomolecular Data and Reference Maps [1 of 5]OT2OD033759 · OD · CARNEGIE-MELLON UNIVERSITY · PI BLOOD, PHILIP D., SILVERSTEIN, JONATHAN C. · 2022 to 2025
$20.4M
BioPortal: An Expansive Knowledgebase of Biomedical Entities and RelationsU24GM143402 · NIGMS · STANFORD UNIVERSITY · PI MUSEN, MARK A · 2021 to 2024
$4.5M
The Metadata Powerwash - Integrated tools to make biomedical data FAIRR01LM013498 · NLM · STANFORD UNIVERSITY · PI MUSEN, MARK A · 2021 to 2024
$1.8M
DB NIH HHS OT2 DB000009NCI NIH HHS U24 CA268108NIGMS NIH HHS U24 GM143402NIH HHS OT2 OD033759NLM NIH HHS R01 LM013498Wellcome Trust
6 · The paper itself

Abstract

It is challenging to determine whether datasets are findable, accessible, interoperable, and reusable (FAIR) because the FAIR Guiding Principles refer to highly idiosyncratic criteria regarding the metadata used to annotate datasets. Specifically, the FAIR principles require metadata to be "rich" and to adhere to "domain-relevant" community standards. Scientific communities should be able to define their own machine-actionable templates for metadata that encode these "rich," discipline-specific elements. We have explored this template-based approach in the context of two software systems. One system is the CEDAR Workbench, which investigators use to author new metadata. The other is the FAIRware Workbench, which evaluates the metadata of archived datasets for their adherence to community standards. Benefits accrue when templates for metadata become central elements in an ecosystem of tools to manage online datasets-both because the templates serve as a community reference for what constitutes FAIR data, and because they embody that perspective in a form that can be distributed among a variety of software applications to assist with data stewardship and data sharing.

Identifiers

PMID36371407
PMCPMC9653497

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.