Evidence map›Paper›PMID 36371383›Full record

ArticleCell death & disease2022

SETD2 transcriptional control of ATG14L/S isoforms regulates autophagosome-lysosome fusion.

Patricia González-Rodríguez, Elizabeth Delorme-Axford, Amélie Bernard, Lily Keane, Vassilis Stratoulias, Kathleen Grabert, Pinelopi Engskog-Vlachos, Jens Füllgrabe, Daniel J Klionsky, Bertrand Joseph

Open access · goldAbstract read
In one paragraph

Article in Cell death & disease, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.6field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 19 citations in OpenAlex.

  1. The ATG14: multi-layer autophagy control and an emerging therapeutic target in cancer.Apoptosis : an international journal on programmed cell death · 2026
    Review
  2. Review
  3. Article
  4. Article
  5. Review
  6. Molecular mechanism on autophagy associated cardiovascular dysfunction inFrontiers in cell and developmental biology · 2025
    Review
  7. FTO-mediated mActa biochimica et biophysica Sinica · 2024
    Article
  8. Preserved autophagy in cognitively intact non-demented individuals with Alzheimer's neuropathology.Alzheimer's & dementia : the journal of the Alzheimer's Association · 2023
    Article
  9. Review
  10. Recent advances in targeting autophagy in cancer.Trends in pharmacological sciences · 2023
    Review
  11. Review
  12. Review
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 5 countries.

Patricia González-RodríguezInstitute of Environmental Medicine, Toxicology Unit, Karolinska Institutet, 17177, Stockholm, Sweden.
Elizabeth Delorme-AxfordLife Sciences Institute, and the Department of Molecular, Cellular and Developmental Biology, University of Michigan, Ann Arbor, MI, USA.ORCID 0000-0002-7455-7616
Amélie BernardLife Sciences Institute, and the Department of Molecular, Cellular and Developmental Biology, University of Michigan, Ann Arbor, MI, USA.
Lily KeaneInstitute of Environmental Medicine, Toxicology Unit, Karolinska Institutet, 17177, Stockholm, Sweden.ORCID 0000-0001-7418-3434
Vassilis StratouliasInstitute of Environmental Medicine, Toxicology Unit, Karolinska Institutet, 17177, Stockholm, Sweden.
Kathleen GrabertInstitute of Environmental Medicine, Toxicology Unit, Karolinska Institutet, 17177, Stockholm, Sweden.ORCID 0000-0002-5628-9400
Pinelopi Engskog-VlachosInstitute of Environmental Medicine, Toxicology Unit, Karolinska Institutet, 17177, Stockholm, Sweden.
Jens FüllgrabeDepartment of Oncology Pathology, Cancer Centrum Karolinska, Karolinska Institutet, 171 76, Stockholm, Sweden.
Daniel J KlionskyLife Sciences Institute, and the Department of Molecular, Cellular and Developmental Biology, University of Michigan, Ann Arbor, MI, USA.
Bertrand JosephInstitute of Environmental Medicine, Toxicology Unit, Karolinska Institutet, 17177, Stockholm, Sweden. Bertrand.Joseph@ki.se.ORCID 0000-0001-5655-9979
Karolinska Institutet · SECentre National de la Recherche Scientifique · FROakland University · USUniversity of Helsinki · FIUniversity of Michigan · USUniversity of Oslo · NO

Funding

The mechanism and regulation of autophagyR35GM131919 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI DANIEL J. KLIONSKY · 2019 to 2026
$6.4M
NIGMS NIH HHS R35 GM131919
6 · The paper itself

Abstract

Macroautophagy/autophagy is an evolutionarily conserved and tightly regulated catabolic process involved in the maintenance of cellular homeostasis whose dysregulation is implicated in several pathological processes. Autophagy begins with the formation of phagophores that engulf cytoplasmic cargo and mature into double-membrane autophagosomes; the latter fuse with lysosomes/vacuoles for cargo degradation and recycling. Here, we report that yeast Set2, a histone lysine methyltransferase, and its mammalian homolog, SETD2, both act as positive transcriptional regulators of autophagy. However, whereas Set2 regulates the expression of several autophagy-related (Atg) genes upon nitrogen starvation, SETD2 effects in mammals were found to be more restricted. In fact, SETD2 appears to primarily regulate the differential expression of protein isoforms encoded by the ATG14 gene. SETD2 promotes the expression of a long ATG14 isoform, ATG14L, that contains an N-terminal cysteine repeats domain, essential for the efficient fusion of the autophagosome with the lysosome, that is absent in the short ATG14 isoform, ATG14S. Accordingly, SETD2 loss of function decreases autophagic flux, as well as the turnover of aggregation-prone proteins such as mutant HTT (huntingtin) leading to increased cellular toxicity. Hence, our findings bring evidence to the emerging concept that the production of autophagy-related protein isoforms can differentially affect core autophagy machinery bringing an additional level of complexity to the regulation of this biological process in more complex organisms.

Indexed as

AutophagosomesMacroautophagyAnimalsAutophagyHistone-Lysine N-MethyltransferaseLysosomesMammalsProtein IsoformsHistone-Lysine N-MethyltransferaseProtein Isoforms

Identifiers

PMID36371383
PMCPMC9653477
OpenAlexW4309046886

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.