Evidence map›Paper›PMID 36371231›Full record

ArticleJournal of translational medicine2022

Differential regulation of TNFα and IL-6 expression contributes to immune evasion in prostate cancer.

Ida Deichaite, Timothy J Sears, Leisa Sutton, Daniel Rebibo, Kylie Morgan, Tyler Nelson, Brent Rose, Pablo Tamayo, Napoleone Ferrara, Fotis Asimakopoulos and 1 more

Open access · goldAbstract read
In one paragraph

Article in Journal of translational medicine, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed, 1 pooled it
4.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 1 synthesis or guideline pooled it, 32 citations in OpenAlex.

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  17. Transcriptional profiles analysis of effects ofFrontiers in cellular and infection microbiology · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Ida DeichaiteDepartment of Radiation Medicine and Applied Sciences, University of California San Diego, La Jolla, CA, USA. ideichaite@ucsd.edu.ORCID 0000-0001-8839-0573
Timothy J SearsBioinformatics and Systems Biology Program, University of California San Diego, La Jolla, CA, USA.
Leisa SuttonMoores Cancer Center, University of California San Diego, La Jolla, CA, USA.
Daniel RebiboMoores Cancer Center, University of California San Diego, La Jolla, CA, USA.
Kylie MorganDepartment of Radiation Medicine and Applied Sciences, University of California San Diego, La Jolla, CA, USA.
Tyler NelsonDepartment of Radiation Medicine and Applied Sciences, University of California San Diego, La Jolla, CA, USA.
Brent RoseDepartment of Radiation Medicine and Applied Sciences, University of California San Diego, La Jolla, CA, USA.
Pablo TamayoMoores Cancer Center, University of California San Diego, La Jolla, CA, USA.
Napoleone FerraraMoores Cancer Center, University of California San Diego, La Jolla, CA, USA.
Fotis Asimakopoulos *Moores Cancer Center, University of California San Diego, La Jolla, CA, USA.
Hannah Carter *Moores Cancer Center, University of California San Diego, La Jolla, CA, USA.
University of California San Diego · US

Funding

VIRAL MALIGNANCYP30CA023100 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Jesse Nodora · 1985 to 2026
$124.9M
The Dana-Farber Cancer Institute Cancer Target Discovery and Development CenterU01CA176058 · NCI · DANA-FARBER CANCER INST · PI HAHN, WILLIAM C. · 2013 to 2021
$7.8M
GENOMIC ANALYSIS OF MEDULLOBLASTOMASR01CA109467 · NCI · CHILDREN'S HOSPITAL BOSTON · PI MESIROV, JILL P., POMEROY, SCOTT LOREN · 2004 to 2015
$7.3M
Knowledge-based Gene Expression Analysis for Biomedical and Cancer ResearchR01CA121941 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI MESIROV, JILL P. · 2006 to 2016
$5.1M
A Rational Systematic Approach to Find Combinations of Pharmacologic and Immune Therapies that Target Identifiable Oncogenic StatesU01CA217885 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI COHEN, EZRA, KAUFMAN, DAN S. · 2017 to 2021
$5.1M
GenePattern and GenePattern Notebook: Integrative 'Omic Analysis for Cancer ResearchU24CA248457 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI MESIROV, JILL P., TAMAYO, PABLO · 2020 to 2024
$4.6M
Supporting and evolving Gene Set Enrichment Analysis and the Molecular Signatures Database for cancer researchU24CA220341 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI MESIROV, JILL P., TAMAYO, PABLO · 2018 to 2022
$3.4M
Co-targeting the HER3 oncogenic signaling circuitry and PD-1 as a novel multimodal precision immunotherapy for HNSCCR01CA247551 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GUTKIND, JORGE SILVIO · 2020 to 2024
$2.5M
Targeting the EGFR-PI3K/mTOR Signaling Circuitry: A Network-Based Approach for Oral Cancer Precision TherapyR01DE026870 · NIDCR · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GUTKIND, JORGE SILVIO · 2018 to 2022
$2.3M
Comprehensive identification of germline-somatic interactionsR01CA269919 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Ludmil B Alexandrov, Hannah Kathryn Carter · 2022 to 2026
$2.2M
Targeting Drug-Resistant Cancer Stem Cell Niches of Gastrointestinal Stromal TumorR01CA226803 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SICKLICK, JASON KEITH · 2019 to 2023
$2.1M
Graduate Training Program in BioinformaticsT32GM139790 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI BAFNA, VINEET, GAASTERLAND, THERESA · 2021 to 2025
$2.1M
NCI NIH HHS P30 CA023100NCI NIH HHS P30CA023100NCI NIH HHS R01 CA109467NCI NIH HHS R01CA109467NCI NIH HHS R01 CA121941NCI NIH HHS R01CA121941NCI NIH HHS R01 CA154480NCI NIH HHS R01CA154480NCI NIH HHS R01 CA226803NCI NIH HHS R01CA226803NCI NIH HHS R01 CA247551NCI NIH HHS R01CA247551NCI NIH HHS R01 CA269919NCI NIH HHS U01 CA176058NCI NIH HHS U01CA176058NCI NIH HHS U01 CA217885NCI NIH HHS U01CA217885NCI NIH HHS U24 CA220341NCI NIH HHS U24CA220341NCI NIH HHS U24 CA248457NCI NIH HHS U24CA248457NIDCR NIH HHS R01 DE026870NIGMS NIH HHS T32 GM139790NIH HHS R01CA269919NIH HHS R01DE026870
6 · The paper itself

Abstract

backgroundThe role of the inflammatory milieu in prostate cancer progression is not well understood. Differences in inflammatory signaling between localized and metastatic disease may point to opportunities for early intervention.

methodsWe modeled PCa disease progression by analyzing RNA-seq of localized vs. metastatic patient samples, followed by CIBERSORTx to assess their immune cell populations. The VHA CDW registry of PCa patients was analyzed for anti-TNF clinical outcomes.

resultsWe observed statistically significant opposing patterns of IL-6 and TNFα expression between localized and metastatic disease. IL-6 was robustly expressed in localized disease and downregulated in metastatic disease. The reverse was observed with TNFα expression. Metastatic disease was also characterized by downregulation of adhesion molecule E-selectin, matrix metalloproteinase ADAMTS-4 and a shift to M2 macrophages whereas localized disease demonstrated a preponderance of M1 macrophages. Treatment with anti-TNF agents was associated with earlier stage disease at diagnosis.

conclusionsOur data points to clearly different inflammatory contexts between localized and metastatic prostate cancer. Primary localized disease demonstrates local inflammation and adaptive immunity, whereas metastases are characterized by immune cold microenvironments and a shift towards resolution of inflammation and tissue repair. Therapies that interfere with these inflammatory networks may offer opportunities for early intervention in monotherapy or in combination with immunotherapies and anti-angiogenic approaches.

Indexed as

Immune EvasionProstatic NeoplasmsHumansInflammationInterleukin-6MaleTumor MicroenvironmentTumor Necrosis Factor-alphaTumor Necrosis Factor InhibitorsInterleukin-6Tumor Necrosis Factor-alphaTumor Necrosis Factor InhibitorsADAMTS-4AP-1BevacizumabFOSBIL-6Immune remodelingMacrophage polarizationProstate cancerSELETNF

Identifiers

PMID36371231
PMCPMC9652804
OpenAlexW4309073122

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.