Evidence map›Paper›PMID 36371196›Full record

Trial reportJournal of translational medicine2022

DNA methylation predicts the outcome of COVID-19 patients with acute respiratory distress syndrome.

Martina Bradic, Sarah Taleb, Binitha Thomas, Omar Chidiac, Amal Robay, Nessiya Hassan, Joel Malek, Ali Ait Hssain, Charbel Abi Khalil

Registry-linked trialOpen access · goldAbstract readClinical Trial
In one paragraph

Trial report in Journal of translational medicine, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT04473131 (Immune Profiling of COVID-19-infected Patients Admitted to the Intensive Care Unit), which is not on this map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.5field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT04473131 unknown statusnot on this map

Immune Profiling of COVID-19-infected Patients Admitted to the Intensive Care Unit (ICU): the IMPROVISE Study

TypeobservationalSponsorHamad Medical CorporationRan2020 to 2022Enrolled300ConditionsCOVID-19ArmsNo intervention
3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 20 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Martina BradicDepartment of Genetic Medicine, Weill Cornell Medicine, New York, USA.
Sarah TalebDivision of Genomics and Translational Biomedicine, College of Health and Life Sciences- HBKU, Doha, Qatar.
Binitha ThomasEpigenetics Cardiovascular Lab, Weill Cornell Medicine-Qatar, Doha, Qatar.
Omar ChidiacEpigenetics Cardiovascular Lab, Weill Cornell Medicine-Qatar, Doha, Qatar.
Amal RobayEpigenetics Cardiovascular Lab, Weill Cornell Medicine-Qatar, Doha, Qatar.
Nessiya HassanNursery and midwifery research department, Hamad Medical Corporation., Doha, Qatar.
Joel MalekGenomics Core. Weill Cornell Medicine-Qatar., Doha, Qatar.
Ali Ait HssainMedical Intensive Care Unit, Hamad Medical Corporation., Doha, Qatar.
Charbel Abi KhalilDepartment of Genetic Medicine, Weill Cornell Medicine, New York, USA. cha2022@med.cornell.edu.ORCID 0000-0002-1428-6324
Weill Cornell Medical College in Qatar · QAHamad Medical Corporation · QACornell University · USMemorial Sloan Kettering Cancer Center · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI SELWYN M VICKERS · 1985 to 2026
$347.4M
NCI NIH HHS P30 CA008748
6 · The paper itself

Abstract

backgroundCOVID-19 infections could be complicated by acute respiratory distress syndrome (ARDS), increasing mortality risk. We sought to assess the methylome of peripheral blood mononuclear cells in COVID-19 with ARDS.

methodsWe recruited 100 COVID-19 patients with ARDS under mechanical ventilation and 33 non-COVID-19 controls between April and July 2020. COVID-19 patients were followed at four time points for 60 days. DNA methylation and immune cell populations were measured at each time point. A multivariate cox proportional risk regression analysis was conducted to identify predictive signatures according to survival.

resultsThe comparison of COVID-19 to controls at inclusion revealed the presence of a 14.4% difference in promoter-associated CpGs in genes that control immune-related pathways such as interferon-gamma and interferon-alpha responses. On day 60, 24% of patients died. The inter-comparison of baseline DNA methylation to the last recorded time point in both COVID-19 groups or the intra-comparison between inclusion and the end of follow-up in every group showed that most changes occurred as the disease progressed, mainly in the AIM gene, which is associated with an intensified immune response in those who recovered. The multivariate Cox proportional risk regression analysis showed that higher methylation of the "Apoptotic execution Pathway" genes (ROC1, ZNF789, and H1F0) at inclusion increases mortality risk by over twofold.

conclusionWe observed an epigenetic signature of immune-related genes in COVID-19 patients with ARDS. Further, Hypermethylation of the apoptotic execution pathway genes predicts the outcome.

trial registrationIMRPOVIE study, NCT04473131.

Indexed as

COVID-19Respiratory Distress SyndromeDNA MethylationHumansLeukocytes, MononuclearRespiration, ArtificialSARS-CoV-2ARDSBiomarkersCOVID-19DNA methylationEpigeneticsMortalitySurvival

Identifiers

PMID36371196
PMCPMC9652914
OpenAlexW4309046079

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.