Evidence map›Paper›PMID 36370277›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2023

Workflow for Quantitative Proteomic Analysis of Intestinal Organoids Using SILAC.

Alexis Gonneaud, Claude Asselin, Véronique Giroux, François-Michel Boisvert

Abstract read
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In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 65% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 0 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Alexis GonneaudDepartment of Immunology and Cell Biology, Applied Cancer Research Pavilion, Faculty of Medicine and Health Sciences, Université de Sherbrooke, QC, Canada.
Claude AsselinDepartment of Immunology and Cell Biology, Applied Cancer Research Pavilion, Faculty of Medicine and Health Sciences, Université de Sherbrooke, QC, Canada.
Véronique GirouxDepartment of Immunology and Cell Biology, Applied Cancer Research Pavilion, Faculty of Medicine and Health Sciences, Université de Sherbrooke, QC, Canada.
François-Michel BoisvertDepartment of Immunology and Cell Biology, Applied Cancer Research Pavilion, Faculty of Medicine and Health Sciences, Université de Sherbrooke, QC, Canada. Francois.Michel.Boisvert@USherbrooke.ca.
Université de Sherbrooke · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Stable isotope labeling by amino acids in cell culture (SILAC) is a strategic quantitative mass spectrometry method to analyze multiple protein samples in different conditions simultaneously. In recent years, 3D cell growth culture conditions have been developed to establish intestinal organoids from isolated crypts, which mimic the intestine's cell composition and organization. Organoids, isolated from normal or diseased tissues, can be used to compare cell distribution and differentiation, signaling pathways, and cell responses to pharmacological agents, therapeutic drugs, endogenous or exogenous metabolites, and environmental stresses, among others. Here, we describe the process of generating SILAC organoids from the mouse small intestine.

Indexed as

OrganoidsProteomicsAmino AcidsAnimalsIntestinesIsotope LabelingMiceWorkflowAmino AcidsIntestinal organoidsMass spectrometryProteomicsSILAC

Identifiers

PMID36370277
OpenAlexW4309082206

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.