Evidence map›Paper›PMID 36369844›Full record

ArticleMolecular genetics & genomic medicine2023

Frataxin deficiency alters gene expression in Friedreich ataxia derived IPSC-neurons and cardiomyocytes.

Mariana B Angulo, Alexander Bertalovitz, Mariana A Argenziano, Jiajia Yang, Aarti Patel, Theresa Zesiewicz, Thomas V McDonald

Open access · goldAbstract read
In one paragraph

Article in Molecular genetics & genomic medicine, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.3field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 14 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Mariana B AnguloHeart Institute, Morsani College of Medicine, University of South Florida, Tampa, Florida, USA.ORCID 0000-0002-1982-8102
Alexander BertalovitzHeart Institute, Morsani College of Medicine, University of South Florida, Tampa, Florida, USA.
Mariana A ArgenzianoHeart Institute, Morsani College of Medicine, University of South Florida, Tampa, Florida, USA.
Jiajia YangHeart Institute, Morsani College of Medicine, University of South Florida, Tampa, Florida, USA.
Aarti PatelDepartment of Medicine (Cardiology), Morsani College of Medicine, University of South Florida, Tampa, Florida, USA.
Theresa ZesiewiczDepartment of Neurology, Morsani College of Medicine, University of South Florida, Tampa, Florida, USA.
Thomas V McDonaldHeart Institute, Morsani College of Medicine, University of South Florida, Tampa, Florida, USA.ORCID 0000-0002-6075-0888
University of South Florida · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundFriedreich's ataxia (FRDA) is an autosomal recessive disease, whereby homozygous inheritance of an expanded GAA trinucleotide repeat expansion in the first intron of the FXN gene leads to transcriptional repression of the encoded protein frataxin. FRDA is a progressive neurodegenerative disorder, but the primary cause of death is heart disease which occurs in 60% of the patients. Several functions of frataxin have been proposed, but none of them fully explain why its deficiency causes the FRDA phenotypes nor why the most affected cell types are neurons and cardiomyocytes.

methodsTo investigate, we generated iPSC-derived neurons (iNs) and cardiomyocytes (iCMs) from an FRDA patient and upregulated FXN expression via lentivirus without altering genomic GAA repeats at the FXN locus.

resultsRNA-seq and differential gene expression enrichment analyses demonstrated that frataxin deficiency affected the expression of glycolytic pathway genes in neurons and extracellular matrix pathway genes in cardiomyocytes. Genes in these pathways were differentially expressed when compared to a control and restored to control levels when FRDA cells were supplemented with frataxin.

conclusionsThese results offer novel insight into specific roles of frataxin deficiency pathogenesis in neurons and cardiomyocytes.

Indexed as

Friedreich AtaxiaInduced Pluripotent Stem CellsFrataxinGene ExpressionHumansMyocytes, CardiacNeuronsFrataxinextracellular matrixfrataxinFriedreich's ataxiaglycolysislentivirus

Identifiers

PMID36369844
PMCPMC9834160
OpenAlexW4308808593

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.