Evidence map›Paper›PMID 36369435›Full record

ArticleScientific reports2022

Differentially expressed long noncoding RNAs and mRNAs in PC12 cells under lysophosphatidylcholine stimulation.

Wen Zhang, Su Dun, Yin Ping, Qingliang Wang, Siqin Tana, Aodong Tana, Si Qin, Xilinqiqige Bao, Alateng Qimuge, Tegexi Baiyin and 4 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 1 pooled it
0.3field-weighted citation impact, top 49% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it, 3 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 1 country.

Wen Zhang *School of Life Science, Inner Mongolia University, Hohhot, 010021, China.
Su Dun *Research and Development Center, HUA Cloud Intelligent Healthcare Co., Ltd, Shenzhen, 518000, China.
Yin Ping *Affiliated Hospital of Inner Mongolia University for Nationalities, Tongliao, 028000, China.
Qingliang WangInner Mongolia Medical University, Hohhot, 010010, China.
Siqin TanaInner Mongolia International Mongolian Hospital, Hohhot, 010065, China.
Aodong TanaInner Mongolia International Mongolian Hospital, Hohhot, 010065, China.
Si QinInner Mongolia International Mongolian Hospital, Hohhot, 010065, China.
Xilinqiqige BaoInner Mongolia Medical University, Hohhot, 010010, China.
Alateng QimugeInner Mongolia International Mongolian Hospital, Hohhot, 010065, China.
Tegexi BaiyinAffiliated Hospital of Inner Mongolia University for Nationalities, Tongliao, 028000, China.
Dezhi YangInner Mongolia International Mongolian Hospital, Hohhot, 010065, China.
Siqin BaoInner Mongolia International Mongolian Hospital, Hohhot, 010065, China.
Seyin BaoyinInner Mongolia International Mongolian Hospital, Hohhot, 010065, China.
Wuhan QimugeInner Mongolia International Mongolian Hospital, Hohhot, 010065, China. 939839367@qq.com.
Inner Mongolia International Mongolian Hospital · CNInner Mongolia Medical University · CNInner Mongolia University for Nationalities · CNCloud Computing Center · CNInner Mongolia University · CN

Funding

Foundation for the team of the research and development of Innovative Mongolian medicine of the 9th batch of "Prairie Talents" rolling project NEI ZU TONG ZI〔2018〕29Foundation of the research and development of Innovative Mongolian medicine &construction of medical laboratory 2016JYS19the Natural science foundation of Inner Mongolia, China 2015BS-0322
6 · The paper itself

Abstract

Lysophosphatidylcholine (LPC) was previously found to show neuroprotective effect on nerve growth factor (NGF) and brain derived neurotrophic factor (BDNF) induced signalings. Also, numerous studies reported the emerging roles of long noncoding RNAs (LncRNAs) involved in neurodegenerative disease. However, the biological mechanism of LPC and expression profile of lncRNAs has not been reported. Here, lncRNAs in PC12 cells under LPC and NGF treatment were analyzed using high throughput sequencing technology for the first time. We identified 564 annotated and 1077 novel lncRNAs in PC12 cells. Among them, 121 lncRNAs were differentially expressed in the PC12 cells under LPC stimulation. KEGG analysis showed that differentially expressed mRNAs co-expressed with lncRNAs mainly enriched in ribosome, oxidative phosphorylation, Parkinson's disease, Huntington's disease and Alzheimer's disease etc. LncRNA-mRNA network analysis showed that lncRNA ENSRNOT00000082515 had interactions with 626 different mRNAs suggesting that lncRNA ENSRNOT00000082515 probably play vital role. Finally, sequencing data were validated by qRT-PCR for ENSRNOT00000084874, ENSRNOT00000082515, LNC_001033 forward Fgf18, Vcam1, and Pck2.

Indexed as

Neurodegenerative DiseasesRNA, Long NoncodingAnimalsGene Expression ProfilingGene Regulatory NetworksLysophosphatidylcholinesNerve Growth FactorPC12 CellsRatsRNA, MessengerLysophosphatidylcholinesNerve Growth FactorRNA, Long NoncodingRNA, Messenger

Identifiers

PMID36369435
PMCPMC9652419
OpenAlexW4308920613

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.