Evidence map›Paper›PMID 36369282›Full record

ArticleNature communications2022

Collective genomic segments with differential pleiotropic patterns between cognitive dimensions and psychopathology.

Max Lam, Chia-Yen Chen, W David Hill, Charley Xia, Ruoyu Tian, Daniel F Levey, Joel Gelernter, Murray B Stein, Alexander S Hatoum, Hailiang Huang and 4 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 1 pooled it
2.6field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 1 synthesis or guideline pooled it, 14 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Dissecting Schizophrenia Biology Using Pleiotropy with Cognitive Genomics.medRxiv : the preprint server for health sciences · 2024
    Article
  7. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 7 institutions in 3 countries.

Max LamDivision of Psychiatry Research, The Zucker Hillside Hospital, Northwell, Glen Oaks, NY, USA.ORCID 0000-0002-4256-7844
Chia-Yen ChenTranslational Biology, Research and Development, Biogen Inc, Cambridge, MA, USA.
W David HillLothian Birth Cohorts group, Department of Psychology, University of Edinburgh, Edinburgh, UK.
Charley XiaLothian Birth Cohorts group, Department of Psychology, University of Edinburgh, Edinburgh, UK.
Ruoyu TianComputational Biology and Human Genetics, Dewpoint Therapeutics, Boston, MA, USA.
Daniel F LeveyDepartment of Psychiatry, Yale University School of Medicine, New Haven, CT, USA.ORCID 0000-0001-8431-9569
Joel GelernterDepartment of Psychiatry, Yale University School of Medicine, New Haven, CT, USA.ORCID 0000-0002-4067-1859
Murray B SteinVA San Diego Healthcare System, San Diego, CA, USA.ORCID 0000-0001-9564-2871
Alexander S HatoumDepartment of Psychiatry, Washington University in St. Louis Medical School, St. Louis, MO, USA.
Hailiang HuangStanley Center for Psychiatric Research, Broad Institute of MIT and Harvard, Cambridge, MA, USA.
Anil K MalhotraDivision of Psychiatry Research, The Zucker Hillside Hospital, Northwell, Glen Oaks, NY, USA.
Heiko RunzTranslational Biology, Research and Development, Biogen Inc, Cambridge, MA, USA.
Tian GeStanley Center for Psychiatric Research, Broad Institute of MIT and Harvard, Cambridge, MA, USA.
Todd LenczDivision of Psychiatry Research, The Zucker Hillside Hospital, Northwell, Glen Oaks, NY, USA. tlencz@northwell.edu.ORCID 0000-0001-8586-338X
Broad Institute · USBiogen (United States) · USFeinstein Institute for Medical Research · USNHS Lothian · GBYale University · USUniversity of California San Diego · USWashington University in St. Louis · US

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Cognitive Genomics as a Window on Neurodevelopment and PsychopathologyR01MH117646 · NIMH · FEINSTEIN INSTITUTE FOR MEDICAL RESEARCH · PI TODD LENCZ · 2018 to 2026
$4.7M
Mass Multivariate Derivation and Validation of AUD Biotypes using Developmental Imaging and Genomic ApproachesK01AA030083 · NIAAA · WASHINGTON UNIVERSITY · PI Alexander S Hatoum · 2022 to 2026
$897k
Exploring the genetic basis of AD progressionR00AG054573 · NIA · MASSACHUSETTS GENERAL HOSPITAL · PI GE, TIAN · 2020 to 2022
$732k
Medical Research Council MR/T030852/1NCATS NIH HHS UL1 TR001863NIAAA NIH HHS K01 AA030083NIA NIH HHS R00 AG054573NIMH NIH HHS R01 MH117646
6 · The paper itself

Abstract

Cognitive deficits are known to be related to most forms of psychopathology. Here, we perform local genetic correlation analysis as a means of identifying independent segments of the genome that show biologically interpretable pleiotropic associations between cognitive dimensions and psychopathology. We identify collective segments of the genome, which we call "meta-loci", showing differential pleiotropic patterns for psychopathology relative to either cognitive task performance (CTP) or performance on a non-cognitive factor (NCF) derived from educational attainment. We observe that neurodevelopmental gene sets expressed during the prenatal-early childhood period predominate in CTP-relevant meta-loci, while post-natal gene sets are more involved in NCF-relevant meta-loci. Further, we demonstrate that neurodevelopmental gene sets are dissociable across CTP meta-loci with respect to their spatial distribution across the brain. Additionally, we find that GABA-ergic, cholinergic, and glutamatergic genes drive pleiotropic relationships within dissociable meta-loci.

Indexed as

Cognition DisordersGenome-Wide Association StudyChild, PreschoolGenomicsHumansPsychopathology

Identifiers

PMID36369282
PMCPMC9652380
OpenAlexW4309046787

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.