Evidence map›Paper›PMID 36367719›Full record

ArticleVeterinary medicine and science2023

Mitochondrial DNA D-loop hyper-variable region 1 variability in Kurdish horse breed.

Milad Nikbakhsh, Sheida Varkoohi, Hamid Reza Seyedabadi

Open access · goldAbstract read
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Article in Veterinary medicine and science, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.1field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

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5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Milad NikbakhshDepartment of Animal Science, College of Agriculture and Natural Resources, Razi University, Kermanshah, Iran.
Sheida VarkoohiDepartment of Animal Science, College of Agriculture and Natural Resources, Razi University, Kermanshah, Iran.
Hamid Reza SeyedabadiAnimal Science Research Institute of IRAN (ASRI), Agricultural Research, Education and Extension Organization (AREEO), Karaj, Iran.
Razi University · IRAgricultural Biotechnology Research Institute of Iran · IR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundKurdish horse is one of the most valuable horse genetic resources in the Middle East.

objectivesTo assess the genetic diversity of Kurdish horses, Mitochondrial DNA D-loop hyper-variable region1 (HVR1) was sequenced in 29 non-related Kurdish horses which were sampled from diverse geographic regions of Iran.

methodsTotal DNA was extracted from the collected blood samples by modified salting out method. The HVR1 was amplified by PCR and then sequenced using ABI PRISM BigDyeTM Terminator Cycle Sequencing Ready Reaction Kit. Consequently, the sequences were trimmed to 294 bp using BIOEDIT to become comparable with other reported HVR1 sequences in GeneBank. Sequence alignment was performed using CLUSTALW package. Haplotype and nucleotide diversity were estimated using DNASP5.10 and phylogenetic tree was constructed by neighbour joining method.

resultsFourteen different haplotypes and 22 polymorphic sites were detected. Haplotype diversity, nucleotide diversity and Tajima D values were 0.901 ± 0.001, 0.01153 ± 0.0020 and -1.378, respectively. Kurdish horse showed a high haplotype and low nucleotide diversity. The compositional frequency of consensus sequences for base A was the highest (29.93%) compared to other three nucleotides (C = 28.91%, T = 26.53% and G = 14.63%). As expected, all of the detected Kurdish horse haplotypes belonged to haplogroup K (i.e., Kurdish horses).

conclusionsAccording to the phylogenetic analysis, Kurdish horses were genetically more closely related to Tibetan, Chinese, Bulgarian and Iranian native horse breeds, compared to other Asian horse breeds, but some traces of European horse breeds were detected in their maternal lines.

Indexed as

DNA, MitochondrialGenetic VariationAnimalsHorsesIranNucleotidesPhylogenySequence Analysis, DNADNA, MitochondrialNucleotidesdiversityhaplogrouphaplotypeKurdish horseMt-DNA

Identifiers

PMID36367719
PMCPMC10029883
OpenAlexW4308770717

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.