Evidence map›Paper›PMID 36366766›Full record

ArticleACS catalysis2022

Designed High-Redox Potential Laccases Exhibit High Functional Diversity.

Shiran Barber-Zucker, Ivan Mateljak, Moshe Goldsmith, Meital Kupervaser, Miguel Alcalde, Sarel J Fleishman

Abstract read
In one paragraph

Article in ACS catalysis, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

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  10. Addressing epistasis in the design of protein function.Proceedings of the National Academy of Sciences of the United States of America · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Shiran Barber-ZuckerDepartment of Biomolecular Sciences, Weizmann Institute of Science, Rehovot 7600001, Israel.ORCID https://orcid.org/0000-0003-1835-730X
Ivan MateljakDepartment of Biocatalysis, Institute of Catalysis, CSIC, Cantoblanco, Madrid 28049, Spain.
Moshe GoldsmithDepartment of Biomolecular Sciences, Weizmann Institute of Science, Rehovot 7600001, Israel.ORCID https://orcid.org/0000-0002-4257-0509
Meital KupervaserNancy and Stephen Grand Israel National Center for Personalized Medicine, Weizmann Institute of Science, Rehovot 7600001, Israel.
Miguel AlcaldeDepartment of Biocatalysis, Institute of Catalysis, CSIC, Cantoblanco, Madrid 28049, Spain.ORCID https://orcid.org/0000-0001-6780-7616
Sarel J FleishmanDepartment of Biomolecular Sciences, Weizmann Institute of Science, Rehovot 7600001, Israel.ORCID https://orcid.org/0000-0003-3177-7560

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

White-rot fungi secrete an impressive repertoire of high-redox potential laccases (HRPLs) and peroxidases for efficient oxidation and utilization of lignin. Laccases are attractive enzymes for the chemical industry due to their broad substrate range and low environmental impact. Since expression of functional recombinant HRPLs is challenging, however, iterative-directed evolution protocols have been applied to improve their expression, activity, and stability. We implement a rational, stabilize-and-diversify strategy to two HRPLs that we could not functionally express. First, we use the PROSS stability-design algorithm to allow functional expression in yeast. Second, we use the stabilized enzymes as starting points for FuncLib active-site design to improve their activity and substrate diversity. Four of the FuncLib-designed HRPLs and their PROSS progenitor exhibit substantial diversity in reactivity profiles against high-redox potential substrates, including lignin monomers. Combinations of 3-4 subtle mutations that change the polarity, solvation, and sterics of the substrate-oxidation site result in orders of magnitude changes in reactivity profiles. These stable and versatile HRPLs are a step toward generating an effective lignin-degrading consortium of enzymes that can be secreted from yeast. The stabilize-and-diversify strategy can be applied to other challenging enzyme families to study and expand the utility of natural enzymes.

Identifiers

PMID36366766
PMCPMC9638991

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.