Evidence map›Paper›PMID 36366498›Full record

ArticleViruses2022

First Isolation and Identification of Homologous Recombination Events of Porcine Adenovirus from Wild Boar.

Mami Oba, Sumiya Borjigin, Fuka Kikuchi, Toru Oi, Hitoshi Takemae, Hiroho Ishida, Hironobu Murakami, Naoyuki Aihara, Takanori Shiga, Junichi Kamiie and 2 more

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.1field-weighted citation impact, top 55% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Mami ObaResearch and Education Center for Prevention of Global Infectious Diseases of Animals, Tokyo University of Agriculture and Technology, Fuchu 183-8509, Tokyo, Japan.ORCID 0000-0002-4187-3217
Sumiya BorjiginResearch and Education Center for Prevention of Global Infectious Diseases of Animals, Tokyo University of Agriculture and Technology, Fuchu 183-8509, Tokyo, Japan.
Fuka KikuchiResearch and Education Center for Prevention of Global Infectious Diseases of Animals, Tokyo University of Agriculture and Technology, Fuchu 183-8509, Tokyo, Japan.
Toru OiFaculty of Bioresources and Environmental Science, Ishikawa Prefectural University, Nonoichi 921-8836, Ishikawa, Japan.
Hitoshi TakemaeResearch and Education Center for Prevention of Global Infectious Diseases of Animals, Tokyo University of Agriculture and Technology, Fuchu 183-8509, Tokyo, Japan.
Hiroho IshidaSchool of Veterinary Medicine, Azabu University, Sagamihara 252-5201, Kanagawa, Japan.
Hironobu MurakamiSchool of Veterinary Medicine, Azabu University, Sagamihara 252-5201, Kanagawa, Japan.ORCID 0000-0002-7560-4445
Naoyuki AiharaSchool of Veterinary Medicine, Azabu University, Sagamihara 252-5201, Kanagawa, Japan.
Takanori ShigaSchool of Veterinary Medicine, Azabu University, Sagamihara 252-5201, Kanagawa, Japan.
Junichi KamiieSchool of Veterinary Medicine, Azabu University, Sagamihara 252-5201, Kanagawa, Japan.
Tetsuya MizutaniResearch and Education Center for Prevention of Global Infectious Diseases of Animals, Tokyo University of Agriculture and Technology, Fuchu 183-8509, Tokyo, Japan.
Makoto NagaiResearch and Education Center for Prevention of Global Infectious Diseases of Animals, Tokyo University of Agriculture and Technology, Fuchu 183-8509, Tokyo, Japan.ORCID 0000-0001-5884-620X
Azabu University · JPTokyo University of Agriculture and Technology · JPIshikawa Prefectural University · JPNational Institute of Infectious Diseases · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Porcine adenoviruses (PAdVs) are distributed in pig populations and classified into five immunologically distinct serotypes (PAdV-1 to 5). In this study, a PAdV was isolated from a fecal sample of wild boar for the first time. Whole-genome analysis revealed that this strain (Ino5) has sequence homology (approximately > 93%) throughout the genome with the PAdV-5 strain HNF-70 that was isolated from a pig in Japan in 1987, except for the hexon, E3 612R, and fiber coding regions. Two possible recombination breakpoints were detected in the hexon and E3 612R regions, which were found to have reduced GC content. Structural prediction analysis showed that a part of the hexon protein corresponding to the tower region of Ino5 had structural differences when compared with HNF-70, suggesting antigenic heterogeneity between these strains. PAdVs were detected in 1.77% (2/113) and 12% (12/100) of the fecal samples from wild boars and pigs collected in Japan by PCR, respectively. Phylogenetic analyses of the hexon and fiber genes revealed that some samples showed different grouping in the hexon and fiber genes, suggesting that these viruses have recombination events. These findings suggest that the PAdV-5 has evolved with homologous recombination events in the same manner as human adenoviruses among not only pig populations, but also wild boars in Japan.

Indexed as

Adenoviruses, HumanAdenoviruses, PorcineAnimalsHomologous RecombinationHumansPhylogenySus scrofaSwinehomologous recombinationisolationporcine adenovirusprotein structurewild boar

Identifiers

PMID36366498
PMCPMC9694405
OpenAlexW4307938943

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.