Evidence map›Paper›PMID 36364348›Full record

ArticleMolecules (Basel, Switzerland)2022

Erythrosin B as a New Photoswitchable Spin Label for Light-Induced Pulsed EPR Dipolar Spectroscopy.

Arnau Bertran, Laura Morbiato, Sara Aquilia, Laura Gabbatore, Marta De Zotti, Christiane R Timmel, Marilena Di Valentin, Alice M Bowen

Open access · goldAbstract read
In one paragraph

Article in Molecules (Basel, Switzerland), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Arnau BertranCentre for Advanced Electron Spin Resonance and Inorganic Chemistry Laboratory, Department of Chemistry, University of Oxford, Oxford OX1 3QR, UK.ORCID 0000-0002-3882-5927
Laura MorbiatoDepartment of Chemical Sciences, University of Padova, 35131 Padova, Italy.
Sara AquiliaDepartment of Chemical Sciences, University of Padova, 35131 Padova, Italy.
Laura GabbatoreDepartment of Chemical Sciences, University of Padova, 35131 Padova, Italy.
Marta De ZottiDepartment of Chemical Sciences, University of Padova, 35131 Padova, Italy.ORCID 0000-0002-3302-6499
Christiane R TimmelCentre for Advanced Electron Spin Resonance and Inorganic Chemistry Laboratory, Department of Chemistry, University of Oxford, Oxford OX1 3QR, UK.
Marilena Di ValentinDepartment of Chemical Sciences, University of Padova, 35131 Padova, Italy.ORCID 0000-0002-2915-8704
Alice M BowenThe National Research Facility for Electron Paramagnetic Resonance, Department of Chemistry and Photon Science Institute, The University of Manchester, Manchester M13 9PL, UK.
University of Padua · ITUniversity of Oxford · GBUniversity of Manchester · GB

Funding

Resource for Biocomputing Visualization and InformaticsP41GM103311 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERRIN, THOMAS E · 2012 to 2017
$8.2M
Centro Studi "Giorgio Levi Cases" Project: Bio-447 molecular DSSCsEngineering and Physical Sciences Research Council DH160004Engineering and Physical Sciences Research Council EP/L011972/1Engineering and Physical Sciences Research Council EP/S033181/1Engineering and Physical Sciences Research Council EP/V035231/1Engineering and Physical Sciences Research Council EP/W014521/1Engineering and Physical Sciences Research Council NS/A000055/1Italian Ministry for University and Research (MUR) PRIN Project 20173LBZM2Italian Ministry for University and Research (MUR) PRIN Project 2020833Y75NIGMS NIH HHS P41 GM103311Royal Society DH160004Royal Society RGF\EA\201050Royal Society RGF\R1\180099Royal Society of Chemistry CAMS Fellowship 2020 ACTF 442 ref. 600310/09The National Institute of Health P41-GM103311The University of Manchester Dame Kathleen Ollerenshaw FellowshipUniversity of Padova P-DiSC#04BIRD2019-UNIPDUniversity of Padova Project 08SIDID2017
6 · The paper itself

Abstract

We present a new photoswitchable spin label for light-induced pulsed electron paramagnetic resonance dipolar spectroscopy (LiPDS), the photoexcited triplet state of erythrosin B (EB), which is ideal for biological applications. With this label, we perform an in-depth study of the orientational effects in dipolar traces acquired using the refocused laser-induced magnetic dipole technique to obtain information on the distance and relative orientation between the EB and nitroxide labels in a rigid model peptide, in good agreement with density functional theory predictions. Additionally, we show that these orientational effects can be averaged to enable an orientation-independent analysis to determine the distance distribution. Furthermore, we demonstrate the feasibility of these experiments above liquid nitrogen temperatures, removing the need for expensive liquid helium or cryogen-free cryostats. The variety of choices in photoswitchable spin labels and the affordability of the experiments are critical for LiPDS to become a widespread methodology in structural biology.

Indexed as

ErythrosineElectron Spin Resonance SpectroscopySpin LabelsTemperatureErythrosineSpin Labelsdistance measurementselectron paramagnetic resonance (EPR)electron spin resonance (ESR)erythrosin Bhigh temperaturelaser-induced magnetic dipole spectroscopy (LaserIMD)orientational effectsphotogenerated triplet statepulsed dipolar spectroscopy (PDS)spin labels

Identifiers

PMID36364348
PMCPMC9657417
OpenAlexW4308331209

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.