Evidence map›Paper›PMID 36362207›Full record

ReviewInternational journal of molecular sciences2022

Graph Pangenomes Track Genetic Variants for Crop Improvement.

Amir Hameed, Pawel Poznanski, Anna Nadolska-Orczyk, Waclaw Orczyk

Abstract readReview
In one paragraph

Review in International journal of molecular sciences, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Amir HameedPlant Breeding and Acclimatization Institute-National Research Institute, Radzikow, 05-870 Blonie, Poland.
Pawel PoznanskiPlant Breeding and Acclimatization Institute-National Research Institute, Radzikow, 05-870 Blonie, Poland.
Anna Nadolska-OrczykPlant Breeding and Acclimatization Institute-National Research Institute, Radzikow, 05-870 Blonie, Poland.ORCID 0000-0001-6127-3860
Waclaw OrczykPlant Breeding and Acclimatization Institute-National Research Institute, Radzikow, 05-870 Blonie, Poland.ORCID 0000-0003-4735-0000

Funding

National Science Center 2019/35/B/NZ9/00323
6 · The paper itself

Abstract

Global climate change and the urgency to transform crops require an exhaustive genetic evaluation. The large polyploid genomes of food crops, such as cereals, make it difficult to identify candidate genes with confirmed hereditary. Although genome-wide association studies (GWAS) have been proficient in identifying genetic variants that are associated with complex traits, the resolution of acquired heritability faces several significant bottlenecks such as incomplete detection of structural variants (SV), genetic heterogeneity, and/or locus heterogeneity. Consequently, a biased estimate is generated with respect to agronomically complex traits. The graph pangenomes have resolved this missing heritability and provide significant details in terms of specific loci segregating among individuals and evolving to variations. The graph pangenome approach facilitates crop improvements through genome-linked fast breeding.

Indexed as

Genome-Wide Association StudyQuantitative Trait LociCrops, AgriculturalHumansMultifactorial InheritancePlant BreedingPolymorphism, Single Nucleotidebreedingcerealsclimate changegenomeheritabilitypresence-absence variantsstructural variantstrait

Identifiers

PMID36362207
PMCPMC9659059

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.