Evidence map›Paper›PMID 36362181›Full record

ArticleInternational journal of molecular sciences2022

The Stress Response of the Holothurian Central Nervous System: A Transcriptomic Analysis.

Sebastián Cruz-González, Eduardo Quesada-Díaz, Yamil Miranda-Negrón, Raúl García-Rosario, Humberto Ortiz-Zuazaga, José E García-Arrarás

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.1field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Sebastián Cruz-GonzálezDepartment of Biology, College of Natural Sciences, University of Puerto Rico, Río Piedras, San Juan, PR 00925, USA.ORCID 0000-0001-6505-0429
Eduardo Quesada-DíazDepartment of Biology, College of Natural Sciences, University of Puerto Rico, Río Piedras, San Juan, PR 00925, USA.
Yamil Miranda-NegrónDepartment of Biology, College of Natural Sciences, University of Puerto Rico, Río Piedras, San Juan, PR 00925, USA.ORCID 0000-0002-2948-7321
Raúl García-RosarioDepartment of Biology, College of Natural Sciences, University of Puerto Rico, Río Piedras, San Juan, PR 00925, USA.
Humberto Ortiz-ZuazagaDepartment of Computer Science, College of Natural Sciences, University of Puerto Rico, Río Piedras, San Juan, PR 00925, USA.ORCID 0000-0002-4667-8357
José E García-ArrarásDepartment of Biology, College of Natural Sciences, University of Puerto Rico, Río Piedras, San Juan, PR 00925, USA.ORCID 0000-0001-9038-7330
University of Puerto Rico at Río Piedras · PR

Funding

SCIENCE AND TECHNOLOGY COMPETENCY & EDUCATION CORE (STCE)P20GM103475 · NIGMS · UNIVERSITY OF PUERTO RICO MED SCIENCES · PI Humberto Guillermo Ortiz-Zuazaga · 2012 to 2026
$52.9M
Upgrade Laboratories Facilities at UPR-Rio PiedrasR25GM061151 · NIGMS · UNIVERSITY OF PUERTO RICO RIO PIEDRAS · PI CARBALLEIRA, NESTOR MANUEL · 2001 to 2023
$32.5M
RIO PIEDRAS MARC U*STAR DEVELOPMENT PROGRAMT34GM007821 · NIGMS · UNIVERSITY OF PUERTO RICO RIO PIEDRAS · PI CARBALLEIRA, NESTOR MANUEL · 1985 to 2020
$20.3M
Balancing degeneration and regeneration in the echinoderm nervous systemR21AG057974 · NIA · UNIVERSITY OF PUERTO RICO RIO PIEDRAS · PI GARCIA-ARRARAS, JOSE E · 2017 to 2019
$646k
OPIOID PEPTIDE GENE EXPRESSION IN REPRODUCTIVE TISSUESF32NS008068 · NINDS · OREGON HEALTH AND SCIENCE UNIVERSITY · PI GARRETT, JAMES E · 1987 to 1989
–
National Science Foundation HRD-1906130NIA NIH HHS R21 AG057974NIGMS NIH HHS P20 GM103475NIGMS NIH HHS P20GM103475NIGMS NIH HHS R25 GM061151NIGMS NIH HHS T34 GM007821NIH HHS 2R25NS08068NIH HHS 5R25GM061151-17NIH HHS 5T34GM007821- 40S1NIH HHS NIH-R21AG057974
6 · The paper itself

Abstract

Injury to the central nervous system (CNS) results in permanent damage and lack of function in most vertebrate animals, due to their limited regenerative capacities. In contrast, echinoderms can fully regenerate their radial nerve cord (RNC) following transection, with little to no scarring. Investigators have associated the regenerative capacity of some organisms to the stress response and inflammation produced by the injury. Here, we explore the gene activation profile of the stressed holothurian CNS. To do this, we performed RNA sequencing on isolated RNC explants submitted to the stress of transection and enzyme dissection and compared them with explants kept in culture for 3 days following dissection. We describe stress-associated genes, including members of heat-shock families, ubiquitin-related pathways, transposons, and apoptosis that were differentially expressed. Surprisingly, the stress response does not induce apoptosis in this system. Other genes associated with stress in other animal models, such as hero proteins and those associated with the integrated stress response, were not found to be differentially expressed either. Our results provide a new viewpoint on the stress response in the nervous system of an organism with amazing regenerative capacities. This is the first step in deciphering the molecular processes that allow echinoderms to undergo fully functional CNS regeneration, and also provides a comparative view of the stress response in other organisms.

Indexed as

Spinal Cord InjuriesTranscriptomeAnimalsCentral Nervous SystemEchinodermataGene Expression ProfilingNerve Regenerationechinodermheat shock proteinsregenerationRNA-seqspinal cord injuryubiquitin

Identifiers

PMID36362181
PMCPMC9657328
OpenAlexW4309091759

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.