Evidence map›Paper›PMID 36362137›Full record

ArticleInternational journal of molecular sciences2022

Recognition of a Clickable Abasic Site Analog by DNA Polymerases and DNA Repair Enzymes.

Anton V Endutkin, Anna V Yudkina, Timofey D Zharkov, Daria V Kim, Dmitry O Zharkov

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.1field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Error-Prone DNA Synthesis on Click-Ligated Templates.Doklady. Biochemistry and biophysics · 2024
    Article
  3. Article
  4. Article
  5. Aberrant Repair of 8-Oxoguanine in Short DNA Bulges.Doklady. Biochemistry and biophysics · 2023
    Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Anton V EndutkinSB RAS Institute of Chemical Biology and Fundamental Medicine, 8 Lavrentieva Ave., Novosibirsk 630090, Russia.ORCID 0000-0002-3647-6591
Anna V YudkinaSB RAS Institute of Chemical Biology and Fundamental Medicine, 8 Lavrentieva Ave., Novosibirsk 630090, Russia.
Timofey D ZharkovSB RAS Institute of Chemical Biology and Fundamental Medicine, 8 Lavrentieva Ave., Novosibirsk 630090, Russia.ORCID 0000-0003-3588-2368
Daria V KimSB RAS Institute of Chemical Biology and Fundamental Medicine, 8 Lavrentieva Ave., Novosibirsk 630090, Russia.
Dmitry O ZharkovSB RAS Institute of Chemical Biology and Fundamental Medicine, 8 Lavrentieva Ave., Novosibirsk 630090, Russia.ORCID 0000-0001-5013-0194
Institute of Chemical Biology and Fundamental Medicine · RUNovosibirsk State University · RU

Funding

Russian Foundation for Basic Research 20-34-90092Russian Ministry of Science and Higher Education 121031300056-8Russian Science Foundation 21-74-10104
6 · The paper itself

Abstract

Azide-alkyne cycloaddition ("click chemistry") has found wide use in the analysis of molecular interactions in living cells. 5-ethynyl-2-(hydroxymethyl)tetrahydrofuran-3-ol (EAP) is a recently developed apurinic/apyrimidinic (AP) site analog functionalized with an ethynyl moiety, which can be introduced into cells in DNA constructs to perform labeling or cross-linking in situ. However, as a non-natural nucleoside, EAP could be subject to removal by DNA repair and misreading by DNA polymerases. Here, we investigate the interaction of this clickable AP site analog with DNA polymerases and base excision repair enzymes. Similarly to the natural AP site, EAP was non-instructive and followed the "A-rule", directing residual but easily detectable incorporation of dAMP by

Indexed as

DNA-(Apurinic or Apyrimidinic Site) LyaseEscherichia coliDNA DamageDNA-Directed DNA PolymeraseDNA Polymerase IDNA RepairEndonucleasesHumansDNA-(Apurinic or Apyrimidinic Site) LyaseDNA-Directed DNA PolymeraseDNA Polymerase IEndonucleasesAP endonucleasesAP siteclick chemistryDNA glycosylasesDNA polymerasesDNA repairtranslesion synthesis

Identifiers

PMID36362137
PMCPMC9655677
OpenAlexW4308118433

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.