Evidence map›Paper›PMID 36362073›Full record

ArticleInternational journal of molecular sciences2022

Effect of Light Quality on Metabolomic, Ionomic, and Transcriptomic Profiles in Tomato Fruit.

Lingran Xiao, Tomoki Shibuya, Toshihiro Watanabe, Kazuhisa Kato, Yoshinori Kanayama

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
4.0field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 21 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Special Issue "State-of-the-Art Molecular Plant Sciences in Japan".International journal of molecular sciences · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Lingran XiaoGraduate School of Agricultural Science, Tohoku University, Aoba-ku, Sendai 980-8572, Japan.
Tomoki ShibuyaFaulty of Agriculture, Yamagata University, Tsuruoka 997-8555, Japan.
Toshihiro WatanabeResearch Faculty of Agriculture, Hokkaido University, Sapporo 060-8589, Japan.ORCID 0000-0003-4466-811X
Kazuhisa KatoGraduate School of Agricultural Science, Tohoku University, Aoba-ku, Sendai 980-8572, Japan.
Yoshinori KanayamaGraduate School of Agricultural Science, Tohoku University, Aoba-ku, Sendai 980-8572, Japan.ORCID 0000-0001-6958-7725
Tohoku University · JPHokkaido University · JPYamagata University · JP

Funding

Japan Science and Technology Agency JPMJSP2114Japan Society for the Promotion of Science 21H04721, 21K05557
6 · The paper itself

Abstract

Light quality affects plant growth and the functional component accumulation of fruits. However, there is little knowledge of the effects of light quality based on multiomics profiles. This study combined transcriptomic, ionomic, and metabolomic analyses to elucidate the effects of light quality on metabolism and gene expression in tomato fruit. Micro-Tom plants were grown under blue or red light-emitting diode light for 16 h daily after anthesis. White fluorescent light was used as a reference. The metabolite and element concentrations and the expression of genes markedly changed in response to blue and red light. Based on the metabolomic analysis, amino acid metabolism and secondary metabolite biosynthesis were active in blue light treatment. According to transcriptomic analysis, differentially expressed genes in blue and red light treatments were enriched in the pathways of secondary metabolite biosynthesis, carbon fixation, and glycine, serine, and threonine metabolism, supporting the results of the metabolomic analysis. Ionomic analysis indicated that the element levels in fruits were more susceptible to changes in light quality than in leaves. The concentration of some ions containing Fe in fruits increased under red light compared to under blue light. The altered expression level of genes encoding metal ion-binding proteins, metal tolerance proteins, and metal transporters in response to blue and red light in the transcriptomic analysis contributes to changes in the ionomic profiles of tomato fruit.

Indexed as

Solanum lycopersicumFruitGene Expression ProfilingGene Expression Regulation, PlantTranscriptomeionomelight qualitymetabolomeMicro-Tomtranscriptome

Identifiers

PMID36362073
PMCPMC9654364
OpenAlexW4308120830

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.